Gene : Bradi2g55760 B. distachyon v3.1
Defline:  (1 of 1) PTHR10555:SF122 - SORTING NEXIN 1 Genomic Order:  6714
Name:  ? Bradi2g55760 Secondary Identifier:  ? PAC:32777155
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g55760 0.5kb upstream 0.5kb upstream 5444 true Bd2: 54043926-54049369 Brachypodium distachyon
Bradi2g55760 0.5kb upstream 0.5kb upstream 500 false Bd2: 54048870-54049369 Brachypodium distachyon
Bradi2g55760 0.5kb downstream 0.5kb downstream 5444 true Bd2: 54043426-54048869 Brachypodium distachyon
Bradi2g55760 0.5kb downstream 0.5kb downstream 500 false Bd2: 54043426-54043925 Brachypodium distachyon
Bradi2g55760 1.0kb upstream 1.0kb upstream 5944 true Bd2: 54043926-54049869 Brachypodium distachyon
Bradi2g55760 1.0kb upstream 1.0kb upstream 1000 false Bd2: 54048870-54049869 Brachypodium distachyon
Bradi2g55760 1.0kb downstream 1.0kb downstream 5944 true Bd2: 54042926-54048869 Brachypodium distachyon
Bradi2g55760 1.0kb downstream 1.0kb downstream 1000 false Bd2: 54042926-54043925 Brachypodium distachyon
Bradi2g55760 2.0kb upstream 2.0kb upstream 6944 true Bd2: 54043926-54050869 Brachypodium distachyon
Bradi2g55760 2.0kb upstream 2.0kb upstream 2000 false Bd2: 54048870-54050869 Brachypodium distachyon
Bradi2g55760 2.0kb downstream 2.0kb downstream 6944 true Bd2: 54041926-54048869 Brachypodium distachyon
Bradi2g55760 2.0kb downstream 2.0kb downstream 2000 false Bd2: 54041926-54043925 Brachypodium distachyon
Bradi2g55760 5.0kb upstream 5.0kb upstream 9944 true Bd2: 54043926-54053869 Brachypodium distachyon
Bradi2g55760 5.0kb upstream 5.0kb upstream 5000 false Bd2: 54048870-54053869 Brachypodium distachyon
Bradi2g55760 5.0kb downstream 5.0kb downstream 9944 true Bd2: 54038926-54048869 Brachypodium distachyon
Bradi2g55760 5.0kb downstream 5.0kb downstream 5000 false Bd2: 54038926-54043925 Brachypodium distachyon
Bradi2g55760 10.0kb upstream 10.0kb upstream 14944 true Bd2: 54043926-54058869 Brachypodium distachyon
Bradi2g55760 10.0kb upstream 10.0kb upstream 10000 false Bd2: 54048870-54058869 Brachypodium distachyon
Bradi2g55760 10.0kb downstream 10.0kb downstream 14944 true Bd2: 54033926-54048869 Brachypodium distachyon
Bradi2g55760 10.0kb downstream 10.0kb downstream 10000 false Bd2: 54033926-54043925 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577955 5269 Grass View MSA
122045293 5273 Angiosperm View MSA
121345603 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.227        
cufflinks 5.119        
cufflinks 5.297        
cufflinks 6.027        
cufflinks 6.256        
cufflinks 5.149        
cufflinks 4.633        
cufflinks 4.957        
cufflinks 5.326        
cufflinks 6.271        
cufflinks 4.641        
cufflinks 5.415        
cufflinks 4.362       Low
cufflinks 4.513       Low
cufflinks 6.223        
cufflinks 4.812        
cufflinks 5.885        
cufflinks 8.115       High
cufflinks 5.13        
cufflinks 4.202       Low
cufflinks 7.041       High
cufflinks 5.777        
cufflinks 5.241        
cufflinks 5.592        
cufflinks 5.615        
cufflinks 6.64        
cufflinks 5.502        
cufflinks 5.846        
cufflinks 5.346        
cufflinks 6.682       High

0 Strain