Gene : Bradi2g56120 B. distachyon v3.1
Defline:  (1 of 2) PTHR24012:SF376 - POLYPYRIMIDINE TRACT-BINDING PROTEIN 3 Genomic Order:  6756
Name:  ? Bradi2g56120 Secondary Identifier:  ? PAC:32776578
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g56120 0.5kb upstream 0.5kb upstream 5381 true Bd2: 54313644-54319024 Brachypodium distachyon
Bradi2g56120 0.5kb upstream 0.5kb upstream 500 false Bd2: 54313644-54314143 Brachypodium distachyon
Bradi2g56120 0.5kb downstream 0.5kb downstream 5381 true Bd2: 54314144-54319524 Brachypodium distachyon
Bradi2g56120 0.5kb downstream 0.5kb downstream 500 false Bd2: 54319025-54319524 Brachypodium distachyon
Bradi2g56120 1.0kb upstream 1.0kb upstream 5881 true Bd2: 54313144-54319024 Brachypodium distachyon
Bradi2g56120 1.0kb upstream 1.0kb upstream 1000 false Bd2: 54313144-54314143 Brachypodium distachyon
Bradi2g56120 1.0kb downstream 1.0kb downstream 5881 true Bd2: 54314144-54320024 Brachypodium distachyon
Bradi2g56120 1.0kb downstream 1.0kb downstream 1000 false Bd2: 54319025-54320024 Brachypodium distachyon
Bradi2g56120 2.0kb upstream 2.0kb upstream 6881 true Bd2: 54312144-54319024 Brachypodium distachyon
Bradi2g56120 2.0kb upstream 2.0kb upstream 2000 false Bd2: 54312144-54314143 Brachypodium distachyon
Bradi2g56120 2.0kb downstream 2.0kb downstream 6881 true Bd2: 54314144-54321024 Brachypodium distachyon
Bradi2g56120 2.0kb downstream 2.0kb downstream 2000 false Bd2: 54319025-54321024 Brachypodium distachyon
Bradi2g56120 5.0kb upstream 5.0kb upstream 9881 true Bd2: 54309144-54319024 Brachypodium distachyon
Bradi2g56120 5.0kb upstream 5.0kb upstream 5000 false Bd2: 54309144-54314143 Brachypodium distachyon
Bradi2g56120 5.0kb downstream 5.0kb downstream 9881 true Bd2: 54314144-54324024 Brachypodium distachyon
Bradi2g56120 5.0kb downstream 5.0kb downstream 5000 false Bd2: 54319025-54324024 Brachypodium distachyon
Bradi2g56120 10.0kb upstream 10.0kb upstream 14881 true Bd2: 54304144-54319024 Brachypodium distachyon
Bradi2g56120 10.0kb upstream 10.0kb upstream 10000 false Bd2: 54304144-54314143 Brachypodium distachyon
Bradi2g56120 10.0kb downstream 10.0kb downstream 14881 true Bd2: 54314144-54329024 Brachypodium distachyon
Bradi2g56120 10.0kb downstream 10.0kb downstream 10000 false Bd2: 54319025-54329024 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586298 5269 Grass View MSA
122046546 5273 Angiosperm View MSA
121348695 5274 Embryophyte View MSA
123380977 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.372        
cufflinks 11.072     High High
cufflinks 9.652        
cufflinks 8.724        
cufflinks 6.169        
cufflinks 9.901     High  
cufflinks 9.218        
cufflinks 7.596        
cufflinks 8.9        
cufflinks 6.702        
cufflinks 6.167        
cufflinks 7.549        
cufflinks 4.722       Low
cufflinks 5.486       Low
cufflinks 4.172       Low
cufflinks 9.591     High  
cufflinks 7.66        
cufflinks 12.928     High High
cufflinks 11.786       High
cufflinks 6.387        
cufflinks 9.524        
cufflinks 8.725        
cufflinks 7.369        
cufflinks 7.474        
cufflinks 9.0        
cufflinks 8.488        
cufflinks 7.177        
cufflinks 8.549        
cufflinks 8.005        
cufflinks 10.185        

0 Strain