Gene : Bradi2g56110 B. distachyon v3.1
Defline:  (1 of 2) PTHR21236//PTHR21236:SF9 - GOLGI MEMBRANE PROTEIN YIP1 Genomic Order:  6754
Name:  ? Bradi2g56110 Secondary Identifier:  ? PAC:32781414
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g56110 0.5kb upstream 0.5kb upstream 3644 true Bd2: 54308035-54311678 Brachypodium distachyon
Bradi2g56110 0.5kb upstream 0.5kb upstream 500 false Bd2: 54308035-54308534 Brachypodium distachyon
Bradi2g56110 0.5kb downstream 0.5kb downstream 3644 true Bd2: 54308535-54312178 Brachypodium distachyon
Bradi2g56110 0.5kb downstream 0.5kb downstream 500 false Bd2: 54311679-54312178 Brachypodium distachyon
Bradi2g56110 1.0kb upstream 1.0kb upstream 4144 true Bd2: 54307535-54311678 Brachypodium distachyon
Bradi2g56110 1.0kb upstream 1.0kb upstream 1000 false Bd2: 54307535-54308534 Brachypodium distachyon
Bradi2g56110 1.0kb downstream 1.0kb downstream 4144 true Bd2: 54308535-54312678 Brachypodium distachyon
Bradi2g56110 1.0kb downstream 1.0kb downstream 1000 false Bd2: 54311679-54312678 Brachypodium distachyon
Bradi2g56110 2.0kb upstream 2.0kb upstream 5144 true Bd2: 54306535-54311678 Brachypodium distachyon
Bradi2g56110 2.0kb upstream 2.0kb upstream 2000 false Bd2: 54306535-54308534 Brachypodium distachyon
Bradi2g56110 2.0kb downstream 2.0kb downstream 5144 true Bd2: 54308535-54313678 Brachypodium distachyon
Bradi2g56110 2.0kb downstream 2.0kb downstream 2000 false Bd2: 54311679-54313678 Brachypodium distachyon
Bradi2g56110 5.0kb upstream 5.0kb upstream 8144 true Bd2: 54303535-54311678 Brachypodium distachyon
Bradi2g56110 5.0kb upstream 5.0kb upstream 5000 false Bd2: 54303535-54308534 Brachypodium distachyon
Bradi2g56110 5.0kb downstream 5.0kb downstream 8144 true Bd2: 54308535-54316678 Brachypodium distachyon
Bradi2g56110 5.0kb downstream 5.0kb downstream 5000 false Bd2: 54311679-54316678 Brachypodium distachyon
Bradi2g56110 10.0kb upstream 10.0kb upstream 13144 true Bd2: 54298535-54311678 Brachypodium distachyon
Bradi2g56110 10.0kb upstream 10.0kb upstream 10000 false Bd2: 54298535-54308534 Brachypodium distachyon
Bradi2g56110 10.0kb downstream 10.0kb downstream 13144 true Bd2: 54308535-54321678 Brachypodium distachyon
Bradi2g56110 10.0kb downstream 10.0kb downstream 10000 false Bd2: 54311679-54321678 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568985 5269 Grass View MSA
122046860 5273 Angiosperm View MSA
121349329 5274 Embryophyte View MSA
123428190 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.945     High  
cufflinks 8.769        
cufflinks 8.508        
cufflinks 7.912        
cufflinks 8.936     High  
cufflinks 7.365        
cufflinks 8.65        
cufflinks 9.61     High  
cufflinks 8.152        
cufflinks 8.305        
cufflinks 6.818        
cufflinks 7.024        
cufflinks 4.722       Low
cufflinks 5.627       Low
cufflinks 5.071       Low
cufflinks 8.627        
cufflinks 16.02     High High
cufflinks 15.873     High High
cufflinks 31.273     High High
cufflinks 11.583     High  
cufflinks 24.325     High High
cufflinks 8.056        
cufflinks 9.088        
cufflinks 8.7        
cufflinks 8.362        
cufflinks 8.112        
cufflinks 5.747       Low
cufflinks 8.708        
cufflinks 8.07        
cufflinks 13.346     High  

0 Strain