Gene : Bradi2g56190 B. distachyon v3.1
Defline:  (1 of 5) PF04842 - Plant protein of unknown function (DUF639) (DUF639) Genomic Order:  6762
Name:  ? Bradi2g56190 Secondary Identifier:  ? PAC:32780285
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g56190 0.5kb upstream 0.5kb upstream 10572 true Bd2: 54374589-54385160 Brachypodium distachyon
Bradi2g56190 0.5kb upstream 0.5kb upstream 500 false Bd2: 54384661-54385160 Brachypodium distachyon
Bradi2g56190 0.5kb downstream 0.5kb downstream 10572 true Bd2: 54374089-54384660 Brachypodium distachyon
Bradi2g56190 0.5kb downstream 0.5kb downstream 500 false Bd2: 54374089-54374588 Brachypodium distachyon
Bradi2g56190 1.0kb upstream 1.0kb upstream 11072 true Bd2: 54374589-54385660 Brachypodium distachyon
Bradi2g56190 1.0kb upstream 1.0kb upstream 1000 false Bd2: 54384661-54385660 Brachypodium distachyon
Bradi2g56190 1.0kb downstream 1.0kb downstream 11072 true Bd2: 54373589-54384660 Brachypodium distachyon
Bradi2g56190 1.0kb downstream 1.0kb downstream 1000 false Bd2: 54373589-54374588 Brachypodium distachyon
Bradi2g56190 2.0kb upstream 2.0kb upstream 12072 true Bd2: 54374589-54386660 Brachypodium distachyon
Bradi2g56190 2.0kb upstream 2.0kb upstream 2000 false Bd2: 54384661-54386660 Brachypodium distachyon
Bradi2g56190 2.0kb downstream 2.0kb downstream 12072 true Bd2: 54372589-54384660 Brachypodium distachyon
Bradi2g56190 2.0kb downstream 2.0kb downstream 2000 false Bd2: 54372589-54374588 Brachypodium distachyon
Bradi2g56190 5.0kb upstream 5.0kb upstream 15072 true Bd2: 54374589-54389660 Brachypodium distachyon
Bradi2g56190 5.0kb upstream 5.0kb upstream 5000 false Bd2: 54384661-54389660 Brachypodium distachyon
Bradi2g56190 5.0kb downstream 5.0kb downstream 15072 true Bd2: 54369589-54384660 Brachypodium distachyon
Bradi2g56190 5.0kb downstream 5.0kb downstream 5000 false Bd2: 54369589-54374588 Brachypodium distachyon
Bradi2g56190 10.0kb upstream 10.0kb upstream 20072 true Bd2: 54374589-54394660 Brachypodium distachyon
Bradi2g56190 10.0kb upstream 10.0kb upstream 10000 false Bd2: 54384661-54394660 Brachypodium distachyon
Bradi2g56190 10.0kb downstream 10.0kb downstream 20072 true Bd2: 54364589-54384660 Brachypodium distachyon
Bradi2g56190 10.0kb downstream 10.0kb downstream 10000 false Bd2: 54364589-54374588 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579183 5269 Grass View MSA
122042087 5273 Angiosperm View MSA
121347344 5274 Embryophyte View MSA
123380532 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.518       Low
cufflinks 2.346        
cufflinks 3.252        
cufflinks 1.92        
cufflinks 3.195        
cufflinks 2.513        
cufflinks 2.196        
cufflinks 3.093        
cufflinks 2.88        
cufflinks 2.744        
cufflinks 5.643       High
cufflinks 3.168        
cufflinks 3.569        
cufflinks 3.722        
cufflinks 2.252        
cufflinks 2.255        
cufflinks 2.28        
cufflinks 1.862       Low
cufflinks 2.83        
cufflinks 3.829        
cufflinks 1.772       Low
cufflinks 3.204        
cufflinks 3.263        
cufflinks 2.617        
cufflinks 2.069        
cufflinks 3.386        
cufflinks 4.553       High
cufflinks 3.404        
cufflinks 3.224        
cufflinks 1.913        

0 Strain