Gene : Bradi2g61550 B. distachyon v3.1
Defline:  (1 of 1) PTHR13483:SF3 - BOX C/D SNORNA PROTEIN 1 Genomic Order:  7474
Name:  ? Bradi2g61550 Secondary Identifier:  ? PAC:32776098
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g61550 0.5kb upstream 0.5kb upstream 4098 true Bd2: 58403293-58407390 Brachypodium distachyon
Bradi2g61550 0.5kb upstream 0.5kb upstream 500 false Bd2: 58406891-58407390 Brachypodium distachyon
Bradi2g61550 0.5kb downstream 0.5kb downstream 4098 true Bd2: 58402793-58406890 Brachypodium distachyon
Bradi2g61550 0.5kb downstream 0.5kb downstream 500 false Bd2: 58402793-58403292 Brachypodium distachyon
Bradi2g61550 1.0kb upstream 1.0kb upstream 4598 true Bd2: 58403293-58407890 Brachypodium distachyon
Bradi2g61550 1.0kb upstream 1.0kb upstream 1000 false Bd2: 58406891-58407890 Brachypodium distachyon
Bradi2g61550 1.0kb downstream 1.0kb downstream 4598 true Bd2: 58402293-58406890 Brachypodium distachyon
Bradi2g61550 1.0kb downstream 1.0kb downstream 1000 false Bd2: 58402293-58403292 Brachypodium distachyon
Bradi2g61550 2.0kb upstream 2.0kb upstream 5598 true Bd2: 58403293-58408890 Brachypodium distachyon
Bradi2g61550 2.0kb upstream 2.0kb upstream 2000 false Bd2: 58406891-58408890 Brachypodium distachyon
Bradi2g61550 2.0kb downstream 2.0kb downstream 5598 true Bd2: 58401293-58406890 Brachypodium distachyon
Bradi2g61550 2.0kb downstream 2.0kb downstream 2000 false Bd2: 58401293-58403292 Brachypodium distachyon
Bradi2g61550 5.0kb upstream 5.0kb upstream 8598 true Bd2: 58403293-58411890 Brachypodium distachyon
Bradi2g61550 5.0kb upstream 5.0kb upstream 5000 false Bd2: 58406891-58411890 Brachypodium distachyon
Bradi2g61550 5.0kb downstream 5.0kb downstream 8598 true Bd2: 58398293-58406890 Brachypodium distachyon
Bradi2g61550 5.0kb downstream 5.0kb downstream 5000 false Bd2: 58398293-58403292 Brachypodium distachyon
Bradi2g61550 10.0kb upstream 10.0kb upstream 13598 true Bd2: 58403293-58416890 Brachypodium distachyon
Bradi2g61550 10.0kb upstream 10.0kb upstream 10000 false Bd2: 58406891-58416890 Brachypodium distachyon
Bradi2g61550 10.0kb downstream 10.0kb downstream 13598 true Bd2: 58393293-58406890 Brachypodium distachyon
Bradi2g61550 10.0kb downstream 10.0kb downstream 10000 false Bd2: 58393293-58403292 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570464 5269 Grass View MSA
122043413 5273 Angiosperm View MSA
121347000 5274 Embryophyte View MSA
123426353 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.258        
cufflinks 1.758        
cufflinks 1.275        
cufflinks 1.482        
cufflinks 0.411       Low
cufflinks 1.418        
cufflinks 1.392        
cufflinks 0.891        
cufflinks 1.407        
cufflinks 0.822        
cufflinks 0.362       Low
cufflinks 0.951        
cufflinks 0.352       Low
cufflinks 0.396       Low
cufflinks 0.414       Low
cufflinks 1.631        
cufflinks 1.332        
cufflinks 2.987       High
cufflinks 1.057        
cufflinks 0.542        
cufflinks 1.14        
cufflinks 0.988        
cufflinks 0.999        
cufflinks 1.068        
cufflinks 1.819       High
cufflinks 0.906        
cufflinks 0.766        
cufflinks 0.838        
cufflinks 0.743        
cufflinks 1.318        

0 Strain