Gene : Bradi2g61800 B. distachyon v3.1
Defline:  (1 of 1) PTHR11851//PTHR11851:SF141 - METALLOPROTEASE Genomic Order:  7505
Name:  ? Bradi2g61800 Secondary Identifier:  ? PAC:32777258
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-3781 Brachypodium distachyon pathologic  
Bdistachyon PWY-7279 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g61800 0.5kb upstream 0.5kb upstream 5442 true Bd2: 58542907-58548348 Brachypodium distachyon
Bradi2g61800 0.5kb upstream 0.5kb upstream 500 false Bd2: 58542907-58543406 Brachypodium distachyon
Bradi2g61800 0.5kb downstream 0.5kb downstream 5442 true Bd2: 58543407-58548848 Brachypodium distachyon
Bradi2g61800 0.5kb downstream 0.5kb downstream 500 false Bd2: 58548349-58548848 Brachypodium distachyon
Bradi2g61800 1.0kb upstream 1.0kb upstream 5942 true Bd2: 58542407-58548348 Brachypodium distachyon
Bradi2g61800 1.0kb upstream 1.0kb upstream 1000 false Bd2: 58542407-58543406 Brachypodium distachyon
Bradi2g61800 1.0kb downstream 1.0kb downstream 5942 true Bd2: 58543407-58549348 Brachypodium distachyon
Bradi2g61800 1.0kb downstream 1.0kb downstream 1000 false Bd2: 58548349-58549348 Brachypodium distachyon
Bradi2g61800 2.0kb upstream 2.0kb upstream 6942 true Bd2: 58541407-58548348 Brachypodium distachyon
Bradi2g61800 2.0kb upstream 2.0kb upstream 2000 false Bd2: 58541407-58543406 Brachypodium distachyon
Bradi2g61800 2.0kb downstream 2.0kb downstream 6942 true Bd2: 58543407-58550348 Brachypodium distachyon
Bradi2g61800 2.0kb downstream 2.0kb downstream 2000 false Bd2: 58548349-58550348 Brachypodium distachyon
Bradi2g61800 5.0kb upstream 5.0kb upstream 9942 true Bd2: 58538407-58548348 Brachypodium distachyon
Bradi2g61800 5.0kb upstream 5.0kb upstream 5000 false Bd2: 58538407-58543406 Brachypodium distachyon
Bradi2g61800 5.0kb downstream 5.0kb downstream 9942 true Bd2: 58543407-58553348 Brachypodium distachyon
Bradi2g61800 5.0kb downstream 5.0kb downstream 5000 false Bd2: 58548349-58553348 Brachypodium distachyon
Bradi2g61800 10.0kb upstream 10.0kb upstream 14942 true Bd2: 58533407-58548348 Brachypodium distachyon
Bradi2g61800 10.0kb upstream 10.0kb upstream 10000 false Bd2: 58533407-58543406 Brachypodium distachyon
Bradi2g61800 10.0kb downstream 10.0kb downstream 14942 true Bd2: 58543407-58558348 Brachypodium distachyon
Bradi2g61800 10.0kb downstream 10.0kb downstream 10000 false Bd2: 58548349-58558348 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577730 5269 Grass View MSA
122050410 5273 Angiosperm View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.167        
cufflinks 1.751        
cufflinks 1.654        
cufflinks 1.735        
cufflinks 0.547       Low
cufflinks 1.495        
cufflinks 1.501        
cufflinks 1.4        
cufflinks 1.432        
cufflinks 1.043        
cufflinks 0.802        
cufflinks 1.084        
cufflinks 0.389       Low
cufflinks 0.52       Low
cufflinks 0.636        
cufflinks 1.661        
cufflinks 0.981        
cufflinks 3.047       High
cufflinks 1.124        
cufflinks 0.298       Low
cufflinks 1.089        
cufflinks 1.28        
cufflinks 1.19        
cufflinks 1.239        
cufflinks 1.654        
cufflinks 1.475        
cufflinks 0.597       Low
cufflinks 1.387        
cufflinks 1.122        
cufflinks 1.342        

0 Strain