Gene : Bradi2g62550 B. distachyon v3.1
Defline:  (1 of 1) PTHR11108//PTHR11108:SF5 - FERROCHELATASE // FERROCHELATASE-2, CHLOROPLASTIC Genomic Order:  7603
Name:  ? Bradi2g62550 Secondary Identifier:  ? PAC:32782325
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon HEME-BIOSYNTHESIS-II Brachypodium distachyon pathologic  
Bdistachyon PWY-5918 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g62550 0.5kb upstream 0.5kb upstream 5786 true Bd2: 58944612-58950397 Brachypodium distachyon
Bradi2g62550 0.5kb upstream 0.5kb upstream 500 false Bd2: 58949898-58950397 Brachypodium distachyon
Bradi2g62550 0.5kb downstream 0.5kb downstream 5786 true Bd2: 58944112-58949897 Brachypodium distachyon
Bradi2g62550 0.5kb downstream 0.5kb downstream 500 false Bd2: 58944112-58944611 Brachypodium distachyon
Bradi2g62550 1.0kb upstream 1.0kb upstream 6286 true Bd2: 58944612-58950897 Brachypodium distachyon
Bradi2g62550 1.0kb upstream 1.0kb upstream 1000 false Bd2: 58949898-58950897 Brachypodium distachyon
Bradi2g62550 1.0kb downstream 1.0kb downstream 6286 true Bd2: 58943612-58949897 Brachypodium distachyon
Bradi2g62550 1.0kb downstream 1.0kb downstream 1000 false Bd2: 58943612-58944611 Brachypodium distachyon
Bradi2g62550 2.0kb upstream 2.0kb upstream 7286 true Bd2: 58944612-58951897 Brachypodium distachyon
Bradi2g62550 2.0kb upstream 2.0kb upstream 2000 false Bd2: 58949898-58951897 Brachypodium distachyon
Bradi2g62550 2.0kb downstream 2.0kb downstream 7286 true Bd2: 58942612-58949897 Brachypodium distachyon
Bradi2g62550 2.0kb downstream 2.0kb downstream 2000 false Bd2: 58942612-58944611 Brachypodium distachyon
Bradi2g62550 5.0kb upstream 5.0kb upstream 10286 true Bd2: 58944612-58954897 Brachypodium distachyon
Bradi2g62550 5.0kb upstream 5.0kb upstream 5000 false Bd2: 58949898-58954897 Brachypodium distachyon
Bradi2g62550 5.0kb downstream 5.0kb downstream 10286 true Bd2: 58939612-58949897 Brachypodium distachyon
Bradi2g62550 5.0kb downstream 5.0kb downstream 5000 false Bd2: 58939612-58944611 Brachypodium distachyon
Bradi2g62550 10.0kb upstream 10.0kb upstream 15286 true Bd2: 58944612-58959897 Brachypodium distachyon
Bradi2g62550 10.0kb upstream 10.0kb upstream 10000 false Bd2: 58949898-58959897 Brachypodium distachyon
Bradi2g62550 10.0kb downstream 10.0kb downstream 15286 true Bd2: 58934612-58949897 Brachypodium distachyon
Bradi2g62550 10.0kb downstream 10.0kb downstream 10000 false Bd2: 58934612-58944611 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571613 5269 Grass View MSA
122044162 5273 Angiosperm View MSA
121346360 5274 Embryophyte View MSA
123426598 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.204     High  
cufflinks 72.722     High  
cufflinks 104.982     High  
cufflinks 72.806     High  
cufflinks 38.2     High  
cufflinks 65.443     High  
cufflinks 59.275     High  
cufflinks 64.881     High  
cufflinks 64.441     High  
cufflinks 54.479     High  
cufflinks 121.859     High High
cufflinks 75.699     High  
cufflinks 86.721     High  
cufflinks 101.692     High  
cufflinks 69.736     High  
cufflinks 67.721     High  
cufflinks 42.135     High  
cufflinks 5.616       Low
cufflinks 20.864     High Low
cufflinks 10.387       Low
cufflinks 18.885     High Low
cufflinks 90.742     High  
cufflinks 63.932     High  
cufflinks 59.078     High  
cufflinks 52.493     High  
cufflinks 95.174     High  
cufflinks 103.771     High  
cufflinks 100.386     High  
cufflinks 97.121     High  
cufflinks 26.285     High  

0 Strain