Gene : Bradi3g00857 B. distachyon v3.1
Defline:  (1 of 2) PTHR23151//PTHR23151:SF59 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED Genomic Order:  85
Name:  ? Bradi3g00857 Secondary Identifier:  ? PAC:32815838
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5173 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon PYRUVDEHYD-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g00857 0.5kb upstream 0.5kb upstream 6059 true Bd3: 477080-483138 Brachypodium distachyon
Bradi3g00857 0.5kb upstream 0.5kb upstream 500 false Bd3: 477080-477579 Brachypodium distachyon
Bradi3g00857 0.5kb downstream 0.5kb downstream 6059 true Bd3: 477580-483638 Brachypodium distachyon
Bradi3g00857 0.5kb downstream 0.5kb downstream 500 false Bd3: 483139-483638 Brachypodium distachyon
Bradi3g00857 1.0kb upstream 1.0kb upstream 6559 true Bd3: 476580-483138 Brachypodium distachyon
Bradi3g00857 1.0kb upstream 1.0kb upstream 1000 false Bd3: 476580-477579 Brachypodium distachyon
Bradi3g00857 1.0kb downstream 1.0kb downstream 6559 true Bd3: 477580-484138 Brachypodium distachyon
Bradi3g00857 1.0kb downstream 1.0kb downstream 1000 false Bd3: 483139-484138 Brachypodium distachyon
Bradi3g00857 2.0kb upstream 2.0kb upstream 7559 true Bd3: 475580-483138 Brachypodium distachyon
Bradi3g00857 2.0kb upstream 2.0kb upstream 2000 false Bd3: 475580-477579 Brachypodium distachyon
Bradi3g00857 2.0kb downstream 2.0kb downstream 7559 true Bd3: 477580-485138 Brachypodium distachyon
Bradi3g00857 2.0kb downstream 2.0kb downstream 2000 false Bd3: 483139-485138 Brachypodium distachyon
Bradi3g00857 5.0kb upstream 5.0kb upstream 10559 true Bd3: 472580-483138 Brachypodium distachyon
Bradi3g00857 5.0kb upstream 5.0kb upstream 5000 false Bd3: 472580-477579 Brachypodium distachyon
Bradi3g00857 5.0kb downstream 5.0kb downstream 10559 true Bd3: 477580-488138 Brachypodium distachyon
Bradi3g00857 5.0kb downstream 5.0kb downstream 5000 false Bd3: 483139-488138 Brachypodium distachyon
Bradi3g00857 10.0kb upstream 10.0kb upstream 15559 true Bd3: 467580-483138 Brachypodium distachyon
Bradi3g00857 10.0kb upstream 10.0kb upstream 10000 false Bd3: 467580-477579 Brachypodium distachyon
Bradi3g00857 10.0kb downstream 10.0kb downstream 15559 true Bd3: 477580-493138 Brachypodium distachyon
Bradi3g00857 10.0kb downstream 10.0kb downstream 10000 false Bd3: 483139-493138 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583040 5269 Grass View MSA
122043289 5273 Angiosperm View MSA
121343868 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.902     High  
cufflinks 17.709     High  
cufflinks 14.854     High  
cufflinks 17.173     High  
cufflinks 14.257     High  
cufflinks 15.264     High  
cufflinks 14.566     High  
cufflinks 14.367     High  
cufflinks 14.775     High  
cufflinks 12.261     High  
cufflinks 6.152       Low
cufflinks 16.163     High  
cufflinks 7.362     High Low
cufflinks 6.088       Low
cufflinks 16.08     High  
cufflinks 18.567     High  
cufflinks 14.338     High  
cufflinks 46.014     High High
cufflinks 12.243        
cufflinks 10.211        
cufflinks 17.973     High  
cufflinks 16.126     High  
cufflinks 14.142     High  
cufflinks 14.386     High  
cufflinks 14.919     High  
cufflinks 13.662     High  
cufflinks 6.201       Low
cufflinks 12.448     High  
cufflinks 13.284     High  
cufflinks 21.361     High  

0 Strain