Gene : Bradi2g58616 B. distachyon v3.1
Defline:  (1 of 1) PF13371//PF13414//PF13424//PF13844 - Tetratricopeptide repeat (TPR_9) // TPR repeat (TPR_11) // Tetratricopeptide repeat (TPR_12) // Glycosyl transferase family 41 (Glyco_transf_41) Genomic Order:  7080
Name:  ? Bradi2g58616 Secondary Identifier:  ? PAC:32781950
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7437 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g58616 0.5kb upstream 0.5kb upstream 10096 true Bd2: 56227231-56237326 Brachypodium distachyon
Bradi2g58616 0.5kb upstream 0.5kb upstream 500 false Bd2: 56236827-56237326 Brachypodium distachyon
Bradi2g58616 0.5kb downstream 0.5kb downstream 10096 true Bd2: 56226731-56236826 Brachypodium distachyon
Bradi2g58616 0.5kb downstream 0.5kb downstream 500 false Bd2: 56226731-56227230 Brachypodium distachyon
Bradi2g58616 1.0kb upstream 1.0kb upstream 10596 true Bd2: 56227231-56237826 Brachypodium distachyon
Bradi2g58616 1.0kb upstream 1.0kb upstream 1000 false Bd2: 56236827-56237826 Brachypodium distachyon
Bradi2g58616 1.0kb downstream 1.0kb downstream 10596 true Bd2: 56226231-56236826 Brachypodium distachyon
Bradi2g58616 1.0kb downstream 1.0kb downstream 1000 false Bd2: 56226231-56227230 Brachypodium distachyon
Bradi2g58616 2.0kb upstream 2.0kb upstream 11596 true Bd2: 56227231-56238826 Brachypodium distachyon
Bradi2g58616 2.0kb upstream 2.0kb upstream 2000 false Bd2: 56236827-56238826 Brachypodium distachyon
Bradi2g58616 2.0kb downstream 2.0kb downstream 11596 true Bd2: 56225231-56236826 Brachypodium distachyon
Bradi2g58616 2.0kb downstream 2.0kb downstream 2000 false Bd2: 56225231-56227230 Brachypodium distachyon
Bradi2g58616 5.0kb upstream 5.0kb upstream 14596 true Bd2: 56227231-56241826 Brachypodium distachyon
Bradi2g58616 5.0kb upstream 5.0kb upstream 5000 false Bd2: 56236827-56241826 Brachypodium distachyon
Bradi2g58616 5.0kb downstream 5.0kb downstream 14596 true Bd2: 56222231-56236826 Brachypodium distachyon
Bradi2g58616 5.0kb downstream 5.0kb downstream 5000 false Bd2: 56222231-56227230 Brachypodium distachyon
Bradi2g58616 10.0kb upstream 10.0kb upstream 19596 true Bd2: 56227231-56246826 Brachypodium distachyon
Bradi2g58616 10.0kb upstream 10.0kb upstream 10000 false Bd2: 56236827-56246826 Brachypodium distachyon
Bradi2g58616 10.0kb downstream 10.0kb downstream 19596 true Bd2: 56217231-56236826 Brachypodium distachyon
Bradi2g58616 10.0kb downstream 10.0kb downstream 10000 false Bd2: 56217231-56227230 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589128 5269 Grass View MSA
122047286 5273 Angiosperm View MSA
121344424 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 0.035     Low  
cufflinks 0.036     Low  
cufflinks 0.028     Low  
cufflinks 0.006     Low Low
cufflinks 0.024     Low  
cufflinks 0.034     Low  
cufflinks 0.019     Low  
cufflinks 0.024     Low  
cufflinks 0.018     Low  
cufflinks 0.013     Low  
cufflinks 0.025     Low  
cufflinks 0.009     Low Low
cufflinks 0.007     Low Low
cufflinks 0.015     Low  
cufflinks 0.018     Low  
cufflinks 0.015     Low  
cufflinks 0.051     Low High
cufflinks 0.029     Low  
cufflinks 0.009     Low Low
cufflinks 0.061     Low High
cufflinks 0.022     Low  
cufflinks 0.022     Low  
cufflinks 0.027     Low  
cufflinks 0.028     Low  
cufflinks 0.028     Low  
cufflinks 0.009     Low Low
cufflinks 0.028     Low  
cufflinks 0.029     Low  
cufflinks 0.034     Low  

0 Strain