Gene : Bradi4g23560 B. distachyon v3.1
Defline:  (1 of 4) PTHR23270 - PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 Genomic Order:  2985
Name:  ? Bradi4g23560 Secondary Identifier:  ? PAC:32790721
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g23560 0.5kb upstream 0.5kb upstream 5961 true Bd4: 28276011-28281971 Brachypodium distachyon
Bradi4g23560 0.5kb upstream 0.5kb upstream 500 false Bd4: 28276011-28276510 Brachypodium distachyon
Bradi4g23560 0.5kb downstream 0.5kb downstream 5961 true Bd4: 28276511-28282471 Brachypodium distachyon
Bradi4g23560 0.5kb downstream 0.5kb downstream 500 false Bd4: 28281972-28282471 Brachypodium distachyon
Bradi4g23560 1.0kb upstream 1.0kb upstream 6461 true Bd4: 28275511-28281971 Brachypodium distachyon
Bradi4g23560 1.0kb upstream 1.0kb upstream 1000 false Bd4: 28275511-28276510 Brachypodium distachyon
Bradi4g23560 1.0kb downstream 1.0kb downstream 6461 true Bd4: 28276511-28282971 Brachypodium distachyon
Bradi4g23560 1.0kb downstream 1.0kb downstream 1000 false Bd4: 28281972-28282971 Brachypodium distachyon
Bradi4g23560 2.0kb upstream 2.0kb upstream 7461 true Bd4: 28274511-28281971 Brachypodium distachyon
Bradi4g23560 2.0kb upstream 2.0kb upstream 2000 false Bd4: 28274511-28276510 Brachypodium distachyon
Bradi4g23560 2.0kb downstream 2.0kb downstream 7461 true Bd4: 28276511-28283971 Brachypodium distachyon
Bradi4g23560 2.0kb downstream 2.0kb downstream 2000 false Bd4: 28281972-28283971 Brachypodium distachyon
Bradi4g23560 5.0kb upstream 5.0kb upstream 10461 true Bd4: 28271511-28281971 Brachypodium distachyon
Bradi4g23560 5.0kb upstream 5.0kb upstream 5000 false Bd4: 28271511-28276510 Brachypodium distachyon
Bradi4g23560 5.0kb downstream 5.0kb downstream 10461 true Bd4: 28276511-28286971 Brachypodium distachyon
Bradi4g23560 5.0kb downstream 5.0kb downstream 5000 false Bd4: 28281972-28286971 Brachypodium distachyon
Bradi4g23560 10.0kb upstream 10.0kb upstream 15461 true Bd4: 28266511-28281971 Brachypodium distachyon
Bradi4g23560 10.0kb upstream 10.0kb upstream 10000 false Bd4: 28266511-28276510 Brachypodium distachyon
Bradi4g23560 10.0kb downstream 10.0kb downstream 15461 true Bd4: 28276511-28291971 Brachypodium distachyon
Bradi4g23560 10.0kb downstream 10.0kb downstream 10000 false Bd4: 28281972-28291971 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586718 5269 Grass View MSA
122043261 5273 Angiosperm View MSA
121344122 5274 Embryophyte View MSA
123426639 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.03     Low  
cufflinks 0.11        
cufflinks 0.085     Low  
cufflinks 0.092     Low  
cufflinks 0.029     Low  
cufflinks 0.132       High
cufflinks 0.091        
cufflinks 0.074     Low  
cufflinks 0.106     Low  
cufflinks 0.035     Low  
cufflinks 0.022     Low Low
cufflinks 0.087        
cufflinks 0.008     Low Low
cufflinks 0.02     Low Low
cufflinks 0.042     Low  
cufflinks 0.105        
cufflinks 0.056     Low  
cufflinks 0.192       High
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.072     Low  
cufflinks 0.05     Low  
cufflinks 0.057     Low  
cufflinks 0.078     Low  
cufflinks 0.111        
cufflinks 0.052     Low  
cufflinks 0.004     Low Low
cufflinks 0.076     Low  
cufflinks 0.066     Low  
cufflinks 0.119     Low  

0 Strain