Gene : Bradi3g03407 B. distachyon v3.1
Defline:  (1 of 15) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  396
Name:  ? Bradi3g03407 Secondary Identifier:  ? PAC:32817792
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g03407 0.5kb upstream 0.5kb upstream 8594 true Bd3: 2229150-2237743 Brachypodium distachyon
Bradi3g03407 0.5kb upstream 0.5kb upstream 500 false Bd3: 2229150-2229649 Brachypodium distachyon
Bradi3g03407 0.5kb downstream 0.5kb downstream 8594 true Bd3: 2229650-2238243 Brachypodium distachyon
Bradi3g03407 0.5kb downstream 0.5kb downstream 500 false Bd3: 2237744-2238243 Brachypodium distachyon
Bradi3g03407 1.0kb upstream 1.0kb upstream 9094 true Bd3: 2228650-2237743 Brachypodium distachyon
Bradi3g03407 1.0kb upstream 1.0kb upstream 1000 false Bd3: 2228650-2229649 Brachypodium distachyon
Bradi3g03407 1.0kb downstream 1.0kb downstream 9094 true Bd3: 2229650-2238743 Brachypodium distachyon
Bradi3g03407 1.0kb downstream 1.0kb downstream 1000 false Bd3: 2237744-2238743 Brachypodium distachyon
Bradi3g03407 2.0kb upstream 2.0kb upstream 10094 true Bd3: 2227650-2237743 Brachypodium distachyon
Bradi3g03407 2.0kb upstream 2.0kb upstream 2000 false Bd3: 2227650-2229649 Brachypodium distachyon
Bradi3g03407 2.0kb downstream 2.0kb downstream 10094 true Bd3: 2229650-2239743 Brachypodium distachyon
Bradi3g03407 2.0kb downstream 2.0kb downstream 2000 false Bd3: 2237744-2239743 Brachypodium distachyon
Bradi3g03407 5.0kb upstream 5.0kb upstream 13094 true Bd3: 2224650-2237743 Brachypodium distachyon
Bradi3g03407 5.0kb upstream 5.0kb upstream 5000 false Bd3: 2224650-2229649 Brachypodium distachyon
Bradi3g03407 5.0kb downstream 5.0kb downstream 13094 true Bd3: 2229650-2242743 Brachypodium distachyon
Bradi3g03407 5.0kb downstream 5.0kb downstream 5000 false Bd3: 2237744-2242743 Brachypodium distachyon
Bradi3g03407 10.0kb upstream 10.0kb upstream 18094 true Bd3: 2219650-2237743 Brachypodium distachyon
Bradi3g03407 10.0kb upstream 10.0kb upstream 10000 false Bd3: 2219650-2229649 Brachypodium distachyon
Bradi3g03407 10.0kb downstream 10.0kb downstream 18094 true Bd3: 2229650-2247743 Brachypodium distachyon
Bradi3g03407 10.0kb downstream 10.0kb downstream 10000 false Bd3: 2237744-2247743 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574675 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.506        
cufflinks 0.836        
cufflinks 0.982        
cufflinks 0.576        
cufflinks 0.207        
cufflinks 0.788        
cufflinks 0.692        
cufflinks 0.756        
cufflinks 0.783        
cufflinks 0.647        
cufflinks 0.057     Low Low
cufflinks 0.74        
cufflinks 0.135        
cufflinks 0.038     Low Low
cufflinks 0.353        
cufflinks 0.786        
cufflinks 0.409        
cufflinks 3.071       High
cufflinks 0.232        
cufflinks 0.009     Low Low
cufflinks 3.88       High
cufflinks 1.046        
cufflinks 0.638        
cufflinks 0.599        
cufflinks 0.627        
cufflinks 0.745        
cufflinks 0.169        
cufflinks 0.778        
cufflinks 0.791        
cufflinks 1.567       High

0 Strain