Gene : Bradi3g03620 B. distachyon v3.1
Defline:  (1 of 2) K12446 - L-arabinokinase (E2.7.1.46) Genomic Order:  426
Name:  ? Bradi3g03620 Secondary Identifier:  ? PAC:32821813
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-82 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g03620 0.5kb upstream 0.5kb upstream 8985 true Bd3: 2406044-2415028 Brachypodium distachyon
Bradi3g03620 0.5kb upstream 0.5kb upstream 500 false Bd3: 2414529-2415028 Brachypodium distachyon
Bradi3g03620 0.5kb downstream 0.5kb downstream 8985 true Bd3: 2405544-2414528 Brachypodium distachyon
Bradi3g03620 0.5kb downstream 0.5kb downstream 500 false Bd3: 2405544-2406043 Brachypodium distachyon
Bradi3g03620 1.0kb upstream 1.0kb upstream 9485 true Bd3: 2406044-2415528 Brachypodium distachyon
Bradi3g03620 1.0kb upstream 1.0kb upstream 1000 false Bd3: 2414529-2415528 Brachypodium distachyon
Bradi3g03620 1.0kb downstream 1.0kb downstream 9485 true Bd3: 2405044-2414528 Brachypodium distachyon
Bradi3g03620 1.0kb downstream 1.0kb downstream 1000 false Bd3: 2405044-2406043 Brachypodium distachyon
Bradi3g03620 2.0kb upstream 2.0kb upstream 10485 true Bd3: 2406044-2416528 Brachypodium distachyon
Bradi3g03620 2.0kb upstream 2.0kb upstream 2000 false Bd3: 2414529-2416528 Brachypodium distachyon
Bradi3g03620 2.0kb downstream 2.0kb downstream 10485 true Bd3: 2404044-2414528 Brachypodium distachyon
Bradi3g03620 2.0kb downstream 2.0kb downstream 2000 false Bd3: 2404044-2406043 Brachypodium distachyon
Bradi3g03620 5.0kb upstream 5.0kb upstream 13485 true Bd3: 2406044-2419528 Brachypodium distachyon
Bradi3g03620 5.0kb upstream 5.0kb upstream 5000 false Bd3: 2414529-2419528 Brachypodium distachyon
Bradi3g03620 5.0kb downstream 5.0kb downstream 13485 true Bd3: 2401044-2414528 Brachypodium distachyon
Bradi3g03620 5.0kb downstream 5.0kb downstream 5000 false Bd3: 2401044-2406043 Brachypodium distachyon
Bradi3g03620 10.0kb upstream 10.0kb upstream 18485 true Bd3: 2406044-2424528 Brachypodium distachyon
Bradi3g03620 10.0kb upstream 10.0kb upstream 10000 false Bd3: 2414529-2424528 Brachypodium distachyon
Bradi3g03620 10.0kb downstream 10.0kb downstream 18485 true Bd3: 2396044-2414528 Brachypodium distachyon
Bradi3g03620 10.0kb downstream 10.0kb downstream 10000 false Bd3: 2396044-2406043 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574913 5269 Grass View MSA
122044133 5273 Angiosperm View MSA
121345310 5274 Embryophyte View MSA
123424614 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.047       Low
cufflinks 2.861        
cufflinks 5.385       High
cufflinks 2.043        
cufflinks 0.999       Low
cufflinks 2.252        
cufflinks 2.566        
cufflinks 1.707        
cufflinks 1.65        
cufflinks 3.334        
cufflinks 2.464        
cufflinks 2.383        
cufflinks 2.255        
cufflinks 1.715        
cufflinks 1.255       Low
cufflinks 3.047        
cufflinks 1.164       Low
cufflinks 2.261        
cufflinks 2.529        
cufflinks 1.796        
cufflinks 1.713        
cufflinks 4.473       High
cufflinks 1.511        
cufflinks 1.336        
cufflinks 1.714        
cufflinks 5.741       High
cufflinks 2.448        
cufflinks 5.852       High
cufflinks 4.874       High
cufflinks 2.219        

0 Strain