Gene : Bradi3g04920 B. distachyon v3.1
Defline:  (1 of 15) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  601
Name:  ? Bradi3g04920 Secondary Identifier:  ? PAC:32821809
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g04920 0.5kb upstream 0.5kb upstream 7614 true Bd3: 3382734-3390347 Brachypodium distachyon
Bradi3g04920 0.5kb upstream 0.5kb upstream 500 false Bd3: 3382734-3383233 Brachypodium distachyon
Bradi3g04920 0.5kb downstream 0.5kb downstream 7614 true Bd3: 3383234-3390847 Brachypodium distachyon
Bradi3g04920 0.5kb downstream 0.5kb downstream 500 false Bd3: 3390348-3390847 Brachypodium distachyon
Bradi3g04920 1.0kb upstream 1.0kb upstream 8114 true Bd3: 3382234-3390347 Brachypodium distachyon
Bradi3g04920 1.0kb upstream 1.0kb upstream 1000 false Bd3: 3382234-3383233 Brachypodium distachyon
Bradi3g04920 1.0kb downstream 1.0kb downstream 8114 true Bd3: 3383234-3391347 Brachypodium distachyon
Bradi3g04920 1.0kb downstream 1.0kb downstream 1000 false Bd3: 3390348-3391347 Brachypodium distachyon
Bradi3g04920 2.0kb upstream 2.0kb upstream 9114 true Bd3: 3381234-3390347 Brachypodium distachyon
Bradi3g04920 2.0kb upstream 2.0kb upstream 2000 false Bd3: 3381234-3383233 Brachypodium distachyon
Bradi3g04920 2.0kb downstream 2.0kb downstream 9114 true Bd3: 3383234-3392347 Brachypodium distachyon
Bradi3g04920 2.0kb downstream 2.0kb downstream 2000 false Bd3: 3390348-3392347 Brachypodium distachyon
Bradi3g04920 5.0kb upstream 5.0kb upstream 12114 true Bd3: 3378234-3390347 Brachypodium distachyon
Bradi3g04920 5.0kb upstream 5.0kb upstream 5000 false Bd3: 3378234-3383233 Brachypodium distachyon
Bradi3g04920 5.0kb downstream 5.0kb downstream 12114 true Bd3: 3383234-3395347 Brachypodium distachyon
Bradi3g04920 5.0kb downstream 5.0kb downstream 5000 false Bd3: 3390348-3395347 Brachypodium distachyon
Bradi3g04920 10.0kb upstream 10.0kb upstream 17114 true Bd3: 3373234-3390347 Brachypodium distachyon
Bradi3g04920 10.0kb upstream 10.0kb upstream 10000 false Bd3: 3373234-3383233 Brachypodium distachyon
Bradi3g04920 10.0kb downstream 10.0kb downstream 17114 true Bd3: 3383234-3400347 Brachypodium distachyon
Bradi3g04920 10.0kb downstream 10.0kb downstream 10000 false Bd3: 3390348-3400347 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575520 5269 Grass View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.903        
cufflinks 7.617       High
cufflinks 6.195       High
cufflinks 4.988        
cufflinks 1.678        
cufflinks 4.847        
cufflinks 5.18        
cufflinks 3.337        
cufflinks 3.708        
cufflinks 1.909        
cufflinks 2.195        
cufflinks 4.158        
cufflinks 2.283        
cufflinks 1.036       Low
cufflinks 2.016        
cufflinks 5.163        
cufflinks 1.844        
cufflinks 8.468       High
cufflinks 2.026        
cufflinks 0.497       Low
cufflinks 4.217        
cufflinks 4.597        
cufflinks 2.948        
cufflinks 3.058        
cufflinks 3.425        
cufflinks 4.767        
cufflinks 1.512        
cufflinks 4.005        
cufflinks 3.538        
cufflinks 5.936       High

0 Strain