Gene : Bradi3g05270 B. distachyon v3.1
Defline:  (1 of 2) KOG1657 - CCAAT-binding factor, subunit C (HAP5) Genomic Order:  648
Name:  ? Bradi3g05270 Secondary Identifier:  ? PAC:32819674
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g05270 0.5kb upstream 0.5kb upstream 3801 true Bd3: 3675680-3679480 Brachypodium distachyon
Bradi3g05270 0.5kb upstream 0.5kb upstream 500 false Bd3: 3678981-3679480 Brachypodium distachyon
Bradi3g05270 0.5kb downstream 0.5kb downstream 3801 true Bd3: 3675180-3678980 Brachypodium distachyon
Bradi3g05270 0.5kb downstream 0.5kb downstream 500 false Bd3: 3675180-3675679 Brachypodium distachyon
Bradi3g05270 1.0kb upstream 1.0kb upstream 4301 true Bd3: 3675680-3679980 Brachypodium distachyon
Bradi3g05270 1.0kb upstream 1.0kb upstream 1000 false Bd3: 3678981-3679980 Brachypodium distachyon
Bradi3g05270 1.0kb downstream 1.0kb downstream 4301 true Bd3: 3674680-3678980 Brachypodium distachyon
Bradi3g05270 1.0kb downstream 1.0kb downstream 1000 false Bd3: 3674680-3675679 Brachypodium distachyon
Bradi3g05270 2.0kb upstream 2.0kb upstream 5301 true Bd3: 3675680-3680980 Brachypodium distachyon
Bradi3g05270 2.0kb upstream 2.0kb upstream 2000 false Bd3: 3678981-3680980 Brachypodium distachyon
Bradi3g05270 2.0kb downstream 2.0kb downstream 5301 true Bd3: 3673680-3678980 Brachypodium distachyon
Bradi3g05270 2.0kb downstream 2.0kb downstream 2000 false Bd3: 3673680-3675679 Brachypodium distachyon
Bradi3g05270 5.0kb upstream 5.0kb upstream 8301 true Bd3: 3675680-3683980 Brachypodium distachyon
Bradi3g05270 5.0kb upstream 5.0kb upstream 5000 false Bd3: 3678981-3683980 Brachypodium distachyon
Bradi3g05270 5.0kb downstream 5.0kb downstream 8301 true Bd3: 3670680-3678980 Brachypodium distachyon
Bradi3g05270 5.0kb downstream 5.0kb downstream 5000 false Bd3: 3670680-3675679 Brachypodium distachyon
Bradi3g05270 10.0kb upstream 10.0kb upstream 13301 true Bd3: 3675680-3688980 Brachypodium distachyon
Bradi3g05270 10.0kb upstream 10.0kb upstream 10000 false Bd3: 3678981-3688980 Brachypodium distachyon
Bradi3g05270 10.0kb downstream 10.0kb downstream 13301 true Bd3: 3665680-3678980 Brachypodium distachyon
Bradi3g05270 10.0kb downstream 10.0kb downstream 10000 false Bd3: 3665680-3675679 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586022 5269 Grass View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.428        
cufflinks 3.907        
cufflinks 3.557        
cufflinks 3.085        
cufflinks 1.969       Low
cufflinks 3.427        
cufflinks 3.632        
cufflinks 2.964        
cufflinks 2.879        
cufflinks 2.756        
cufflinks 3.854        
cufflinks 3.586        
cufflinks 2.612        
cufflinks 2.422        
cufflinks 2.074       Low
cufflinks 4.071        
cufflinks 3.4        
cufflinks 6.301       High
cufflinks 3.585        
cufflinks 1.208       Low
cufflinks 4.894       High
cufflinks 3.481        
cufflinks 2.305        
cufflinks 2.673        
cufflinks 3.252        
cufflinks 4.196        
cufflinks 4.054        
cufflinks 3.423        
cufflinks 3.033        
cufflinks 5.146       High

0 Strain