Gene : Bradi3g05437 B. distachyon v3.1
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  668
Name:  ? Bradi3g05437 Secondary Identifier:  ? PAC:32823498
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g05437 0.5kb upstream 0.5kb upstream 6833 true Bd3: 3835677-3842509 Brachypodium distachyon
Bradi3g05437 0.5kb upstream 0.5kb upstream 500 false Bd3: 3835677-3836176 Brachypodium distachyon
Bradi3g05437 0.5kb downstream 0.5kb downstream 6833 true Bd3: 3836177-3843009 Brachypodium distachyon
Bradi3g05437 0.5kb downstream 0.5kb downstream 500 false Bd3: 3842510-3843009 Brachypodium distachyon
Bradi3g05437 1.0kb upstream 1.0kb upstream 7333 true Bd3: 3835177-3842509 Brachypodium distachyon
Bradi3g05437 1.0kb upstream 1.0kb upstream 1000 false Bd3: 3835177-3836176 Brachypodium distachyon
Bradi3g05437 1.0kb downstream 1.0kb downstream 7333 true Bd3: 3836177-3843509 Brachypodium distachyon
Bradi3g05437 1.0kb downstream 1.0kb downstream 1000 false Bd3: 3842510-3843509 Brachypodium distachyon
Bradi3g05437 2.0kb upstream 2.0kb upstream 8333 true Bd3: 3834177-3842509 Brachypodium distachyon
Bradi3g05437 2.0kb upstream 2.0kb upstream 2000 false Bd3: 3834177-3836176 Brachypodium distachyon
Bradi3g05437 2.0kb downstream 2.0kb downstream 8333 true Bd3: 3836177-3844509 Brachypodium distachyon
Bradi3g05437 2.0kb downstream 2.0kb downstream 2000 false Bd3: 3842510-3844509 Brachypodium distachyon
Bradi3g05437 5.0kb upstream 5.0kb upstream 11333 true Bd3: 3831177-3842509 Brachypodium distachyon
Bradi3g05437 5.0kb upstream 5.0kb upstream 5000 false Bd3: 3831177-3836176 Brachypodium distachyon
Bradi3g05437 5.0kb downstream 5.0kb downstream 11333 true Bd3: 3836177-3847509 Brachypodium distachyon
Bradi3g05437 5.0kb downstream 5.0kb downstream 5000 false Bd3: 3842510-3847509 Brachypodium distachyon
Bradi3g05437 10.0kb upstream 10.0kb upstream 16333 true Bd3: 3826177-3842509 Brachypodium distachyon
Bradi3g05437 10.0kb upstream 10.0kb upstream 10000 false Bd3: 3826177-3836176 Brachypodium distachyon
Bradi3g05437 10.0kb downstream 10.0kb downstream 16333 true Bd3: 3836177-3852509 Brachypodium distachyon
Bradi3g05437 10.0kb downstream 10.0kb downstream 10000 false Bd3: 3842510-3852509 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579399 5269 Grass View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.966        
cufflinks 8.095        
cufflinks 4.308        
cufflinks 8.046        
cufflinks 2.882        
cufflinks 8.431        
cufflinks 7.923        
cufflinks 4.815        
cufflinks 6.883        
cufflinks 3.95        
cufflinks 7.999        
cufflinks 6.889        
cufflinks 7.717     High  
cufflinks 9.579     High High
cufflinks 5.247        
cufflinks 7.789        
cufflinks 5.441        
cufflinks 1.139       Low
cufflinks 2.74        
cufflinks 1.366       Low
cufflinks 2.095       Low
cufflinks 4.314        
cufflinks 4.736        
cufflinks 7.743        
cufflinks 9.417       High
cufflinks 4.492        
cufflinks 8.371        
cufflinks 4.212        
cufflinks 4.624        
cufflinks 3.374        

0 Strain