Gene : Bradi3g05340 B. distachyon v3.1
Defline:  (1 of 4) K17686 - Cu+-exporting ATPase (copA, ATP7) Genomic Order:  658
Name:  ? Bradi3g05340 Secondary Identifier:  ? PAC:32821699
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g05340 0.5kb upstream 0.5kb upstream 5893 true Bd3: 3754320-3760212 Brachypodium distachyon
Bradi3g05340 0.5kb upstream 0.5kb upstream 500 false Bd3: 3759713-3760212 Brachypodium distachyon
Bradi3g05340 0.5kb downstream 0.5kb downstream 5893 true Bd3: 3753820-3759712 Brachypodium distachyon
Bradi3g05340 0.5kb downstream 0.5kb downstream 500 false Bd3: 3753820-3754319 Brachypodium distachyon
Bradi3g05340 1.0kb upstream 1.0kb upstream 6393 true Bd3: 3754320-3760712 Brachypodium distachyon
Bradi3g05340 1.0kb upstream 1.0kb upstream 1000 false Bd3: 3759713-3760712 Brachypodium distachyon
Bradi3g05340 1.0kb downstream 1.0kb downstream 6393 true Bd3: 3753320-3759712 Brachypodium distachyon
Bradi3g05340 1.0kb downstream 1.0kb downstream 1000 false Bd3: 3753320-3754319 Brachypodium distachyon
Bradi3g05340 2.0kb upstream 2.0kb upstream 7393 true Bd3: 3754320-3761712 Brachypodium distachyon
Bradi3g05340 2.0kb upstream 2.0kb upstream 2000 false Bd3: 3759713-3761712 Brachypodium distachyon
Bradi3g05340 2.0kb downstream 2.0kb downstream 7393 true Bd3: 3752320-3759712 Brachypodium distachyon
Bradi3g05340 2.0kb downstream 2.0kb downstream 2000 false Bd3: 3752320-3754319 Brachypodium distachyon
Bradi3g05340 5.0kb upstream 5.0kb upstream 10393 true Bd3: 3754320-3764712 Brachypodium distachyon
Bradi3g05340 5.0kb upstream 5.0kb upstream 5000 false Bd3: 3759713-3764712 Brachypodium distachyon
Bradi3g05340 5.0kb downstream 5.0kb downstream 10393 true Bd3: 3749320-3759712 Brachypodium distachyon
Bradi3g05340 5.0kb downstream 5.0kb downstream 5000 false Bd3: 3749320-3754319 Brachypodium distachyon
Bradi3g05340 10.0kb upstream 10.0kb upstream 15393 true Bd3: 3754320-3769712 Brachypodium distachyon
Bradi3g05340 10.0kb upstream 10.0kb upstream 10000 false Bd3: 3759713-3769712 Brachypodium distachyon
Bradi3g05340 10.0kb downstream 10.0kb downstream 15393 true Bd3: 3744320-3759712 Brachypodium distachyon
Bradi3g05340 10.0kb downstream 10.0kb downstream 10000 false Bd3: 3744320-3754319 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578380 5269 Grass View MSA
122045942 5273 Angiosperm View MSA
121346195 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.735        
cufflinks 8.53        
cufflinks 14.325     High High
cufflinks 6.906        
cufflinks 22.205     High High
cufflinks 8.533        
cufflinks 7.485        
cufflinks 6.683        
cufflinks 8.529        
cufflinks 9.22        
cufflinks 11.538     High  
cufflinks 12.104     High  
cufflinks 10.822     High  
cufflinks 7.442        
cufflinks 10.178     High  
cufflinks 8.373        
cufflinks 7.115        
cufflinks 18.463     High High
cufflinks 9.31        
cufflinks 8.527        
cufflinks 7.048        
cufflinks 15.248     High High
cufflinks 7.306        
cufflinks 7.029        
cufflinks 6.491       Low
cufflinks 12.858     High  
cufflinks 10.254     High  
cufflinks 13.371     High  
cufflinks 13.867     High High
cufflinks 11.059        

0 Strain