Gene : Bradi3g05360 B. distachyon v3.1
Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1) Genomic Order:  660
Name:  ? Bradi3g05360 Secondary Identifier:  ? PAC:32823611
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ARGSYNBSUB-PWY Brachypodium distachyon pathologic  
Bdistachyon ARGSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon CITRULBIO-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUTAMINDEG-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY0-162 Brachypodium distachyon pathologic  
Bdistachyon PWY-4984 Brachypodium distachyon pathologic  
Bdistachyon PWY-5686 Brachypodium distachyon pathologic  
Bdistachyon PWY-7211 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g05360 0.5kb upstream 0.5kb upstream 4553 true Bd3: 3777750-3782302 Brachypodium distachyon
Bradi3g05360 0.5kb upstream 0.5kb upstream 500 false Bd3: 3781803-3782302 Brachypodium distachyon
Bradi3g05360 0.5kb downstream 0.5kb downstream 4553 true Bd3: 3777250-3781802 Brachypodium distachyon
Bradi3g05360 0.5kb downstream 0.5kb downstream 500 false Bd3: 3777250-3777749 Brachypodium distachyon
Bradi3g05360 1.0kb upstream 1.0kb upstream 5053 true Bd3: 3777750-3782802 Brachypodium distachyon
Bradi3g05360 1.0kb upstream 1.0kb upstream 1000 false Bd3: 3781803-3782802 Brachypodium distachyon
Bradi3g05360 1.0kb downstream 1.0kb downstream 5053 true Bd3: 3776750-3781802 Brachypodium distachyon
Bradi3g05360 1.0kb downstream 1.0kb downstream 1000 false Bd3: 3776750-3777749 Brachypodium distachyon
Bradi3g05360 2.0kb upstream 2.0kb upstream 6053 true Bd3: 3777750-3783802 Brachypodium distachyon
Bradi3g05360 2.0kb upstream 2.0kb upstream 2000 false Bd3: 3781803-3783802 Brachypodium distachyon
Bradi3g05360 2.0kb downstream 2.0kb downstream 6053 true Bd3: 3775750-3781802 Brachypodium distachyon
Bradi3g05360 2.0kb downstream 2.0kb downstream 2000 false Bd3: 3775750-3777749 Brachypodium distachyon
Bradi3g05360 5.0kb upstream 5.0kb upstream 9053 true Bd3: 3777750-3786802 Brachypodium distachyon
Bradi3g05360 5.0kb upstream 5.0kb upstream 5000 false Bd3: 3781803-3786802 Brachypodium distachyon
Bradi3g05360 5.0kb downstream 5.0kb downstream 9053 true Bd3: 3772750-3781802 Brachypodium distachyon
Bradi3g05360 5.0kb downstream 5.0kb downstream 5000 false Bd3: 3772750-3777749 Brachypodium distachyon
Bradi3g05360 10.0kb upstream 10.0kb upstream 14053 true Bd3: 3777750-3791802 Brachypodium distachyon
Bradi3g05360 10.0kb upstream 10.0kb upstream 10000 false Bd3: 3781803-3791802 Brachypodium distachyon
Bradi3g05360 10.0kb downstream 10.0kb downstream 14053 true Bd3: 3767750-3781802 Brachypodium distachyon
Bradi3g05360 10.0kb downstream 10.0kb downstream 10000 false Bd3: 3767750-3777749 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573496 5269 Grass View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.073     High  
cufflinks 29.609     High High
cufflinks 27.761     High  
cufflinks 29.507     High High
cufflinks 13.369     High Low
cufflinks 24.313     High  
cufflinks 25.33     High  
cufflinks 19.449     High  
cufflinks 23.914     High  
cufflinks 19.031     High  
cufflinks 26.646     High  
cufflinks 20.498     High  
cufflinks 18.041     High  
cufflinks 24.745     High  
cufflinks 13.396     High Low
cufflinks 23.947     High  
cufflinks 20.102     High  
cufflinks 28.175     High  
cufflinks 23.493     High  
cufflinks 16.502     High Low
cufflinks 20.034     High  
cufflinks 22.605     High  
cufflinks 20.859     High  
cufflinks 22.661     High  
cufflinks 27.188     High  
cufflinks 25.747     High  
cufflinks 22.653     High  
cufflinks 24.913     High  
cufflinks 23.431     High  
cufflinks 21.864     High  

0 Strain