Gene : Bradi3g01116 B. distachyon v3.1
Defline:  (1 of 58) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  117
Name:  ? Bradi3g01116 Secondary Identifier:  ? PAC:32820288
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g01116 0.5kb upstream 0.5kb upstream 3737 true Bd3: 674458-678194 Brachypodium distachyon
Bradi3g01116 0.5kb upstream 0.5kb upstream 500 false Bd3: 677695-678194 Brachypodium distachyon
Bradi3g01116 0.5kb downstream 0.5kb downstream 3737 true Bd3: 673958-677694 Brachypodium distachyon
Bradi3g01116 0.5kb downstream 0.5kb downstream 500 false Bd3: 673958-674457 Brachypodium distachyon
Bradi3g01116 1.0kb upstream 1.0kb upstream 4237 true Bd3: 674458-678694 Brachypodium distachyon
Bradi3g01116 1.0kb upstream 1.0kb upstream 1000 false Bd3: 677695-678694 Brachypodium distachyon
Bradi3g01116 1.0kb downstream 1.0kb downstream 4237 true Bd3: 673458-677694 Brachypodium distachyon
Bradi3g01116 1.0kb downstream 1.0kb downstream 1000 false Bd3: 673458-674457 Brachypodium distachyon
Bradi3g01116 2.0kb upstream 2.0kb upstream 5237 true Bd3: 674458-679694 Brachypodium distachyon
Bradi3g01116 2.0kb upstream 2.0kb upstream 2000 false Bd3: 677695-679694 Brachypodium distachyon
Bradi3g01116 2.0kb downstream 2.0kb downstream 5237 true Bd3: 672458-677694 Brachypodium distachyon
Bradi3g01116 2.0kb downstream 2.0kb downstream 2000 false Bd3: 672458-674457 Brachypodium distachyon
Bradi3g01116 5.0kb upstream 5.0kb upstream 8237 true Bd3: 674458-682694 Brachypodium distachyon
Bradi3g01116 5.0kb upstream 5.0kb upstream 5000 false Bd3: 677695-682694 Brachypodium distachyon
Bradi3g01116 5.0kb downstream 5.0kb downstream 8237 true Bd3: 669458-677694 Brachypodium distachyon
Bradi3g01116 5.0kb downstream 5.0kb downstream 5000 false Bd3: 669458-674457 Brachypodium distachyon
Bradi3g01116 10.0kb upstream 10.0kb upstream 13237 true Bd3: 674458-687694 Brachypodium distachyon
Bradi3g01116 10.0kb upstream 10.0kb upstream 10000 false Bd3: 677695-687694 Brachypodium distachyon
Bradi3g01116 10.0kb downstream 10.0kb downstream 13237 true Bd3: 664458-677694 Brachypodium distachyon
Bradi3g01116 10.0kb downstream 10.0kb downstream 10000 false Bd3: 664458-674457 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571480 5269 Grass View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.398        
cufflinks 8.373        
cufflinks 6.189        
cufflinks 6.026        
cufflinks 3.298        
cufflinks 7.316        
cufflinks 7.939        
cufflinks 5.819        
cufflinks 6.795        
cufflinks 3.481        
cufflinks 1.118       Low
cufflinks 6.106        
cufflinks 0.769       Low
cufflinks 1.043       Low
cufflinks 1.956       Low
cufflinks 8.347        
cufflinks 4.389        
cufflinks 18.001     High High
cufflinks 5.575        
cufflinks 1.148       Low
cufflinks 8.641        
cufflinks 5.949        
cufflinks 5.134        
cufflinks 5.656        
cufflinks 6.759        
cufflinks 4.883        
cufflinks 1.994       Low
cufflinks 4.394        
cufflinks 4.833        
cufflinks 11.256       High

0 Strain