Gene : Bradi3g01667 B. distachyon v3.1
Defline:  (1 of 9) 3.4.22.69 - SARS coronavirus main proteinase / Severe acute respiratory syndrome coronavirus main protease Genomic Order:  177
Name:  ? Bradi3g01667 Secondary Identifier:  ? PAC:32814843
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g01667 0.5kb upstream 0.5kb upstream 4245 true Bd3: 1038872-1043116 Brachypodium distachyon
Bradi3g01667 0.5kb upstream 0.5kb upstream 500 false Bd3: 1042617-1043116 Brachypodium distachyon
Bradi3g01667 0.5kb downstream 0.5kb downstream 4245 true Bd3: 1038372-1042616 Brachypodium distachyon
Bradi3g01667 0.5kb downstream 0.5kb downstream 500 false Bd3: 1038372-1038871 Brachypodium distachyon
Bradi3g01667 1.0kb upstream 1.0kb upstream 4745 true Bd3: 1038872-1043616 Brachypodium distachyon
Bradi3g01667 1.0kb upstream 1.0kb upstream 1000 false Bd3: 1042617-1043616 Brachypodium distachyon
Bradi3g01667 1.0kb downstream 1.0kb downstream 4745 true Bd3: 1037872-1042616 Brachypodium distachyon
Bradi3g01667 1.0kb downstream 1.0kb downstream 1000 false Bd3: 1037872-1038871 Brachypodium distachyon
Bradi3g01667 2.0kb upstream 2.0kb upstream 5745 true Bd3: 1038872-1044616 Brachypodium distachyon
Bradi3g01667 2.0kb upstream 2.0kb upstream 2000 false Bd3: 1042617-1044616 Brachypodium distachyon
Bradi3g01667 2.0kb downstream 2.0kb downstream 5745 true Bd3: 1036872-1042616 Brachypodium distachyon
Bradi3g01667 2.0kb downstream 2.0kb downstream 2000 false Bd3: 1036872-1038871 Brachypodium distachyon
Bradi3g01667 5.0kb upstream 5.0kb upstream 8745 true Bd3: 1038872-1047616 Brachypodium distachyon
Bradi3g01667 5.0kb upstream 5.0kb upstream 5000 false Bd3: 1042617-1047616 Brachypodium distachyon
Bradi3g01667 5.0kb downstream 5.0kb downstream 8745 true Bd3: 1033872-1042616 Brachypodium distachyon
Bradi3g01667 5.0kb downstream 5.0kb downstream 5000 false Bd3: 1033872-1038871 Brachypodium distachyon
Bradi3g01667 10.0kb upstream 10.0kb upstream 13745 true Bd3: 1038872-1052616 Brachypodium distachyon
Bradi3g01667 10.0kb upstream 10.0kb upstream 10000 false Bd3: 1042617-1052616 Brachypodium distachyon
Bradi3g01667 10.0kb downstream 10.0kb downstream 13745 true Bd3: 1028872-1042616 Brachypodium distachyon
Bradi3g01667 10.0kb downstream 10.0kb downstream 10000 false Bd3: 1028872-1038871 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589321 5269 Grass View MSA
122047772 5273 Angiosperm View MSA
121310791 5274 Embryophyte View MSA
123348191 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.0        
cufflinks 4.166        
cufflinks 3.635        
cufflinks 3.583        
cufflinks 2.23       Low
cufflinks 3.873        
cufflinks 3.389        
cufflinks 3.466        
cufflinks 4.285        
cufflinks 2.455        
cufflinks 3.062        
cufflinks 3.912        
cufflinks 2.605        
cufflinks 2.799        
cufflinks 3.739        
cufflinks 3.645        
cufflinks 2.464        
cufflinks 3.922        
cufflinks 2.217       Low
cufflinks 1.663       Low
cufflinks 3.287        
cufflinks 3.901        
cufflinks 3.748        
cufflinks 3.722        
cufflinks 3.79        
cufflinks 3.548        
cufflinks 2.806        
cufflinks 3.16        
cufflinks 3.438        
cufflinks 4.821       High

0 Strain