Gene : Bradi3g01817 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  194
Name:  ? Bradi3g01817 Secondary Identifier:  ? PAC:32813386
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g01817 0.5kb upstream 0.5kb upstream 5273 true Bd3: 1127397-1132669 Brachypodium distachyon
Bradi3g01817 0.5kb upstream 0.5kb upstream 500 false Bd3: 1127397-1127896 Brachypodium distachyon
Bradi3g01817 0.5kb downstream 0.5kb downstream 5273 true Bd3: 1127897-1133169 Brachypodium distachyon
Bradi3g01817 0.5kb downstream 0.5kb downstream 500 false Bd3: 1132670-1133169 Brachypodium distachyon
Bradi3g01817 1.0kb upstream 1.0kb upstream 5773 true Bd3: 1126897-1132669 Brachypodium distachyon
Bradi3g01817 1.0kb upstream 1.0kb upstream 1000 false Bd3: 1126897-1127896 Brachypodium distachyon
Bradi3g01817 1.0kb downstream 1.0kb downstream 5773 true Bd3: 1127897-1133669 Brachypodium distachyon
Bradi3g01817 1.0kb downstream 1.0kb downstream 1000 false Bd3: 1132670-1133669 Brachypodium distachyon
Bradi3g01817 2.0kb upstream 2.0kb upstream 6773 true Bd3: 1125897-1132669 Brachypodium distachyon
Bradi3g01817 2.0kb upstream 2.0kb upstream 2000 false Bd3: 1125897-1127896 Brachypodium distachyon
Bradi3g01817 2.0kb downstream 2.0kb downstream 6773 true Bd3: 1127897-1134669 Brachypodium distachyon
Bradi3g01817 2.0kb downstream 2.0kb downstream 2000 false Bd3: 1132670-1134669 Brachypodium distachyon
Bradi3g01817 5.0kb upstream 5.0kb upstream 9773 true Bd3: 1122897-1132669 Brachypodium distachyon
Bradi3g01817 5.0kb upstream 5.0kb upstream 5000 false Bd3: 1122897-1127896 Brachypodium distachyon
Bradi3g01817 5.0kb downstream 5.0kb downstream 9773 true Bd3: 1127897-1137669 Brachypodium distachyon
Bradi3g01817 5.0kb downstream 5.0kb downstream 5000 false Bd3: 1132670-1137669 Brachypodium distachyon
Bradi3g01817 10.0kb upstream 10.0kb upstream 14773 true Bd3: 1117897-1132669 Brachypodium distachyon
Bradi3g01817 10.0kb upstream 10.0kb upstream 10000 false Bd3: 1117897-1127896 Brachypodium distachyon
Bradi3g01817 10.0kb downstream 10.0kb downstream 14773 true Bd3: 1127897-1142669 Brachypodium distachyon
Bradi3g01817 10.0kb downstream 10.0kb downstream 10000 false Bd3: 1132670-1142669 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574674 5269 Grass View MSA
122046913 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.273        
cufflinks 0.322        
cufflinks 0.411        
cufflinks 0.421        
cufflinks 0.235        
cufflinks 0.368        
cufflinks 0.416        
cufflinks 0.365        
cufflinks 0.401        
cufflinks 0.196       Low
cufflinks 0.276        
cufflinks 0.234        
cufflinks 0.152       Low
cufflinks 0.157       Low
cufflinks 0.223        
cufflinks 0.383        
cufflinks 0.24        
cufflinks 0.612       High
cufflinks 0.251        
cufflinks 0.365        
cufflinks 0.589       High
cufflinks 0.236        
cufflinks 0.473        
cufflinks 0.311        
cufflinks 0.396        
cufflinks 0.208        
cufflinks 0.228        
cufflinks 0.46        
cufflinks 0.347        
cufflinks 0.415        

0 Strain