Gene : Bradi3g01950 B. distachyon v3.1
Defline:  (1 of 2) K01885 - glutamyl-tRNA synthetase (EARS, gltX) Genomic Order:  208
Name:  ? Bradi3g01950 Secondary Identifier:  ? PAC:32817442
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5188 Brachypodium distachyon pathologic  
Bdistachyon PWY-5918 Brachypodium distachyon pathologic  
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g01950 0.5kb upstream 0.5kb upstream 5721 true Bd3: 1183457-1189177 Brachypodium distachyon
Bradi3g01950 0.5kb upstream 0.5kb upstream 500 false Bd3: 1188678-1189177 Brachypodium distachyon
Bradi3g01950 0.5kb downstream 0.5kb downstream 5721 true Bd3: 1182957-1188677 Brachypodium distachyon
Bradi3g01950 0.5kb downstream 0.5kb downstream 500 false Bd3: 1182957-1183456 Brachypodium distachyon
Bradi3g01950 1.0kb upstream 1.0kb upstream 6221 true Bd3: 1183457-1189677 Brachypodium distachyon
Bradi3g01950 1.0kb upstream 1.0kb upstream 1000 false Bd3: 1188678-1189677 Brachypodium distachyon
Bradi3g01950 1.0kb downstream 1.0kb downstream 6221 true Bd3: 1182457-1188677 Brachypodium distachyon
Bradi3g01950 1.0kb downstream 1.0kb downstream 1000 false Bd3: 1182457-1183456 Brachypodium distachyon
Bradi3g01950 2.0kb upstream 2.0kb upstream 7221 true Bd3: 1183457-1190677 Brachypodium distachyon
Bradi3g01950 2.0kb upstream 2.0kb upstream 2000 false Bd3: 1188678-1190677 Brachypodium distachyon
Bradi3g01950 2.0kb downstream 2.0kb downstream 7221 true Bd3: 1181457-1188677 Brachypodium distachyon
Bradi3g01950 2.0kb downstream 2.0kb downstream 2000 false Bd3: 1181457-1183456 Brachypodium distachyon
Bradi3g01950 5.0kb upstream 5.0kb upstream 10221 true Bd3: 1183457-1193677 Brachypodium distachyon
Bradi3g01950 5.0kb upstream 5.0kb upstream 5000 false Bd3: 1188678-1193677 Brachypodium distachyon
Bradi3g01950 5.0kb downstream 5.0kb downstream 10221 true Bd3: 1178457-1188677 Brachypodium distachyon
Bradi3g01950 5.0kb downstream 5.0kb downstream 5000 false Bd3: 1178457-1183456 Brachypodium distachyon
Bradi3g01950 10.0kb upstream 10.0kb upstream 15221 true Bd3: 1183457-1198677 Brachypodium distachyon
Bradi3g01950 10.0kb upstream 10.0kb upstream 10000 false Bd3: 1188678-1198677 Brachypodium distachyon
Bradi3g01950 10.0kb downstream 10.0kb downstream 15221 true Bd3: 1173457-1188677 Brachypodium distachyon
Bradi3g01950 10.0kb downstream 10.0kb downstream 10000 false Bd3: 1173457-1183456 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572726 5269 Grass View MSA
122041760 5273 Angiosperm View MSA
121345245 5274 Embryophyte View MSA
123424323 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.56     High  
cufflinks 24.651     High High
cufflinks 21.698     High  
cufflinks 22.077     High High
cufflinks 11.79     High  
cufflinks 20.601     High  
cufflinks 20.969     High  
cufflinks 15.966     High  
cufflinks 17.56     High  
cufflinks 17.259     High  
cufflinks 17.127     High  
cufflinks 19.717     High  
cufflinks 13.472     High  
cufflinks 13.823     High  
cufflinks 12.179     High  
cufflinks 24.439     High High
cufflinks 17.633     High  
cufflinks 9.864       Low
cufflinks 18.697     High  
cufflinks 5.193       Low
cufflinks 10.413        
cufflinks 20.372     High  
cufflinks 14.422     High  
cufflinks 16.741     High  
cufflinks 19.279     High  
cufflinks 19.536     High  
cufflinks 10.328     High Low
cufflinks 18.958     High  
cufflinks 20.166     High  
cufflinks 17.51     High  

0 Strain