Gene : Bradi3g02487 B. distachyon v3.1
Defline:  (1 of 2) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  281
Name:  ? Bradi3g02487 Secondary Identifier:  ? PAC:32819010
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon BRANCHED-CHAIN-AA-SYN-PWY Brachypodium distachyon pathologic  
Bdistachyon LEUSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g02487 0.5kb upstream 0.5kb upstream 4671 true Bd3: 1504205-1508875 Brachypodium distachyon
Bradi3g02487 0.5kb upstream 0.5kb upstream 500 false Bd3: 1508376-1508875 Brachypodium distachyon
Bradi3g02487 0.5kb downstream 0.5kb downstream 4671 true Bd3: 1503705-1508375 Brachypodium distachyon
Bradi3g02487 0.5kb downstream 0.5kb downstream 500 false Bd3: 1503705-1504204 Brachypodium distachyon
Bradi3g02487 1.0kb upstream 1.0kb upstream 5171 true Bd3: 1504205-1509375 Brachypodium distachyon
Bradi3g02487 1.0kb upstream 1.0kb upstream 1000 false Bd3: 1508376-1509375 Brachypodium distachyon
Bradi3g02487 1.0kb downstream 1.0kb downstream 5171 true Bd3: 1503205-1508375 Brachypodium distachyon
Bradi3g02487 1.0kb downstream 1.0kb downstream 1000 false Bd3: 1503205-1504204 Brachypodium distachyon
Bradi3g02487 2.0kb upstream 2.0kb upstream 6171 true Bd3: 1504205-1510375 Brachypodium distachyon
Bradi3g02487 2.0kb upstream 2.0kb upstream 2000 false Bd3: 1508376-1510375 Brachypodium distachyon
Bradi3g02487 2.0kb downstream 2.0kb downstream 6171 true Bd3: 1502205-1508375 Brachypodium distachyon
Bradi3g02487 2.0kb downstream 2.0kb downstream 2000 false Bd3: 1502205-1504204 Brachypodium distachyon
Bradi3g02487 5.0kb upstream 5.0kb upstream 9171 true Bd3: 1504205-1513375 Brachypodium distachyon
Bradi3g02487 5.0kb upstream 5.0kb upstream 5000 false Bd3: 1508376-1513375 Brachypodium distachyon
Bradi3g02487 5.0kb downstream 5.0kb downstream 9171 true Bd3: 1499205-1508375 Brachypodium distachyon
Bradi3g02487 5.0kb downstream 5.0kb downstream 5000 false Bd3: 1499205-1504204 Brachypodium distachyon
Bradi3g02487 10.0kb upstream 10.0kb upstream 14171 true Bd3: 1504205-1518375 Brachypodium distachyon
Bradi3g02487 10.0kb upstream 10.0kb upstream 10000 false Bd3: 1508376-1518375 Brachypodium distachyon
Bradi3g02487 10.0kb downstream 10.0kb downstream 14171 true Bd3: 1494205-1508375 Brachypodium distachyon
Bradi3g02487 10.0kb downstream 10.0kb downstream 10000 false Bd3: 1494205-1504204 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568502 5269 Grass View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.688     High  
cufflinks 52.017     High  
cufflinks 44.606     High  
cufflinks 43.906     High  
cufflinks 35.375     High  
cufflinks 56.038     High High
cufflinks 54.146     High  
cufflinks 43.248     High  
cufflinks 51.127     High  
cufflinks 33.402     High  
cufflinks 63.335     High High
cufflinks 49.102     High  
cufflinks 57.638     High High
cufflinks 70.613     High High
cufflinks 38.683     High  
cufflinks 55.82     High  
cufflinks 38.331     High  
cufflinks 22.512     High Low
cufflinks 39.596     High  
cufflinks 16.774     High Low
cufflinks 22.753     High Low
cufflinks 37.391     High  
cufflinks 43.321     High  
cufflinks 53.008     High  
cufflinks 52.25     High  
cufflinks 39.589     High  
cufflinks 59.435     High High
cufflinks 40.848     High  
cufflinks 38.634     High  
cufflinks 24.301     High Low

0 Strain