Gene : Bradi4g43920 B. distachyon v3.1
Defline:  (1 of 1) PTHR21499:SF33 - HOMOSERINE DEHYDROGENASE Genomic Order:  5661
Name:  ? Bradi4g43920 Secondary Identifier:  ? PAC:32787508
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon HOMOSERSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-3001 Brachypodium distachyon pathologic  
Bdistachyon PWY-724 Brachypodium distachyon pathologic  
Bdistachyon THRESYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g43920 0.5kb upstream 0.5kb upstream 4394 true Bd4: 47427395-47431788 Brachypodium distachyon
Bradi4g43920 0.5kb upstream 0.5kb upstream 500 false Bd4: 47427395-47427894 Brachypodium distachyon
Bradi4g43920 0.5kb downstream 0.5kb downstream 4394 true Bd4: 47427895-47432288 Brachypodium distachyon
Bradi4g43920 0.5kb downstream 0.5kb downstream 500 false Bd4: 47431789-47432288 Brachypodium distachyon
Bradi4g43920 1.0kb upstream 1.0kb upstream 4894 true Bd4: 47426895-47431788 Brachypodium distachyon
Bradi4g43920 1.0kb upstream 1.0kb upstream 1000 false Bd4: 47426895-47427894 Brachypodium distachyon
Bradi4g43920 1.0kb downstream 1.0kb downstream 4894 true Bd4: 47427895-47432788 Brachypodium distachyon
Bradi4g43920 1.0kb downstream 1.0kb downstream 1000 false Bd4: 47431789-47432788 Brachypodium distachyon
Bradi4g43920 2.0kb upstream 2.0kb upstream 5894 true Bd4: 47425895-47431788 Brachypodium distachyon
Bradi4g43920 2.0kb upstream 2.0kb upstream 2000 false Bd4: 47425895-47427894 Brachypodium distachyon
Bradi4g43920 2.0kb downstream 2.0kb downstream 5894 true Bd4: 47427895-47433788 Brachypodium distachyon
Bradi4g43920 2.0kb downstream 2.0kb downstream 2000 false Bd4: 47431789-47433788 Brachypodium distachyon
Bradi4g43920 5.0kb upstream 5.0kb upstream 8894 true Bd4: 47422895-47431788 Brachypodium distachyon
Bradi4g43920 5.0kb upstream 5.0kb upstream 5000 false Bd4: 47422895-47427894 Brachypodium distachyon
Bradi4g43920 5.0kb downstream 5.0kb downstream 8894 true Bd4: 47427895-47436788 Brachypodium distachyon
Bradi4g43920 5.0kb downstream 5.0kb downstream 5000 false Bd4: 47431789-47436788 Brachypodium distachyon
Bradi4g43920 10.0kb upstream 10.0kb upstream 13894 true Bd4: 47417895-47431788 Brachypodium distachyon
Bradi4g43920 10.0kb upstream 10.0kb upstream 10000 false Bd4: 47417895-47427894 Brachypodium distachyon
Bradi4g43920 10.0kb downstream 10.0kb downstream 13894 true Bd4: 47427895-47441788 Brachypodium distachyon
Bradi4g43920 10.0kb downstream 10.0kb downstream 10000 false Bd4: 47431789-47441788 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571730 5269 Grass View MSA
122043747 5273 Angiosperm View MSA
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.846     High  
cufflinks 9.537        
cufflinks 9.548        
cufflinks 10.208        
cufflinks 10.032     High  
cufflinks 9.429     High  
cufflinks 9.469        
cufflinks 8.906        
cufflinks 9.894     High  
cufflinks 12.835     High High
cufflinks 6.268       Low
cufflinks 8.192        
cufflinks 6.781       Low
cufflinks 7.279        
cufflinks 9.094     High  
cufflinks 10.338     High  
cufflinks 15.017     High High
cufflinks 11.405        
cufflinks 11.172        
cufflinks 3.262       Low
cufflinks 12.332     High  
cufflinks 10.352     High  
cufflinks 9.314     High  
cufflinks 9.763     High  
cufflinks 10.781     High  
cufflinks 10.589        
cufflinks 5.095       Low
cufflinks 11.087     High  
cufflinks 11.408     High  
cufflinks 10.455        

0 Strain