Gene : Bradi3g07840 B. distachyon v3.1
Defline:  (1 of 9) KOG4207 - Predicted splicing factor, SR protein superfamily Genomic Order:  993
Name:  ? Bradi3g07840 Secondary Identifier:  ? PAC:32823612
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g07840 0.5kb upstream 0.5kb upstream 5676 true Bd3: 6010859-6016534 Brachypodium distachyon
Bradi3g07840 0.5kb upstream 0.5kb upstream 500 false Bd3: 6010859-6011358 Brachypodium distachyon
Bradi3g07840 0.5kb downstream 0.5kb downstream 5676 true Bd3: 6011359-6017034 Brachypodium distachyon
Bradi3g07840 0.5kb downstream 0.5kb downstream 500 false Bd3: 6016535-6017034 Brachypodium distachyon
Bradi3g07840 1.0kb upstream 1.0kb upstream 6176 true Bd3: 6010359-6016534 Brachypodium distachyon
Bradi3g07840 1.0kb upstream 1.0kb upstream 1000 false Bd3: 6010359-6011358 Brachypodium distachyon
Bradi3g07840 1.0kb downstream 1.0kb downstream 6176 true Bd3: 6011359-6017534 Brachypodium distachyon
Bradi3g07840 1.0kb downstream 1.0kb downstream 1000 false Bd3: 6016535-6017534 Brachypodium distachyon
Bradi3g07840 2.0kb upstream 2.0kb upstream 7176 true Bd3: 6009359-6016534 Brachypodium distachyon
Bradi3g07840 2.0kb upstream 2.0kb upstream 2000 false Bd3: 6009359-6011358 Brachypodium distachyon
Bradi3g07840 2.0kb downstream 2.0kb downstream 7176 true Bd3: 6011359-6018534 Brachypodium distachyon
Bradi3g07840 2.0kb downstream 2.0kb downstream 2000 false Bd3: 6016535-6018534 Brachypodium distachyon
Bradi3g07840 5.0kb upstream 5.0kb upstream 10176 true Bd3: 6006359-6016534 Brachypodium distachyon
Bradi3g07840 5.0kb upstream 5.0kb upstream 5000 false Bd3: 6006359-6011358 Brachypodium distachyon
Bradi3g07840 5.0kb downstream 5.0kb downstream 10176 true Bd3: 6011359-6021534 Brachypodium distachyon
Bradi3g07840 5.0kb downstream 5.0kb downstream 5000 false Bd3: 6016535-6021534 Brachypodium distachyon
Bradi3g07840 10.0kb upstream 10.0kb upstream 15176 true Bd3: 6001359-6016534 Brachypodium distachyon
Bradi3g07840 10.0kb upstream 10.0kb upstream 10000 false Bd3: 6001359-6011358 Brachypodium distachyon
Bradi3g07840 10.0kb downstream 10.0kb downstream 15176 true Bd3: 6011359-6026534 Brachypodium distachyon
Bradi3g07840 10.0kb downstream 10.0kb downstream 10000 false Bd3: 6016535-6026534 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041103 5273 Angiosperm View MSA
124583173 5269 Grass View MSA
121345808 5274 Embryophyte View MSA
123427736 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.07     High  
cufflinks 15.274     High  
cufflinks 16.37     High  
cufflinks 16.62     High  
cufflinks 9.59     High Low
cufflinks 14.691     High  
cufflinks 13.506     High  
cufflinks 12.014     High  
cufflinks 14.948     High  
cufflinks 15.149     High  
cufflinks 12.488     High  
cufflinks 13.66     High  
cufflinks 8.62     High Low
cufflinks 9.983     High  
cufflinks 8.953     High Low
cufflinks 12.666     High  
cufflinks 13.307     High  
cufflinks 19.863     High High
cufflinks 11.955        
cufflinks 7.222       Low
cufflinks 17.65     High  
cufflinks 16.448     High  
cufflinks 12.312     High  
cufflinks 13.82     High  
cufflinks 15.981     High  
cufflinks 18.695     High  
cufflinks 12.669     High  
cufflinks 17.279     High  
cufflinks 15.92     High  
cufflinks 20.209     High High

0 Strain