Gene : Bradi3g08050 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1024
Name:  ? Bradi3g08050 Secondary Identifier:  ? PAC:32814207
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g08050 0.5kb upstream 0.5kb upstream 4797 true Bd3: 6256573-6261369 Brachypodium distachyon
Bradi3g08050 0.5kb upstream 0.5kb upstream 500 false Bd3: 6256573-6257072 Brachypodium distachyon
Bradi3g08050 0.5kb downstream 0.5kb downstream 4797 true Bd3: 6257073-6261869 Brachypodium distachyon
Bradi3g08050 0.5kb downstream 0.5kb downstream 500 false Bd3: 6261370-6261869 Brachypodium distachyon
Bradi3g08050 1.0kb upstream 1.0kb upstream 5297 true Bd3: 6256073-6261369 Brachypodium distachyon
Bradi3g08050 1.0kb upstream 1.0kb upstream 1000 false Bd3: 6256073-6257072 Brachypodium distachyon
Bradi3g08050 1.0kb downstream 1.0kb downstream 5297 true Bd3: 6257073-6262369 Brachypodium distachyon
Bradi3g08050 1.0kb downstream 1.0kb downstream 1000 false Bd3: 6261370-6262369 Brachypodium distachyon
Bradi3g08050 2.0kb upstream 2.0kb upstream 6297 true Bd3: 6255073-6261369 Brachypodium distachyon
Bradi3g08050 2.0kb upstream 2.0kb upstream 2000 false Bd3: 6255073-6257072 Brachypodium distachyon
Bradi3g08050 2.0kb downstream 2.0kb downstream 6297 true Bd3: 6257073-6263369 Brachypodium distachyon
Bradi3g08050 2.0kb downstream 2.0kb downstream 2000 false Bd3: 6261370-6263369 Brachypodium distachyon
Bradi3g08050 5.0kb upstream 5.0kb upstream 9297 true Bd3: 6252073-6261369 Brachypodium distachyon
Bradi3g08050 5.0kb upstream 5.0kb upstream 5000 false Bd3: 6252073-6257072 Brachypodium distachyon
Bradi3g08050 5.0kb downstream 5.0kb downstream 9297 true Bd3: 6257073-6266369 Brachypodium distachyon
Bradi3g08050 5.0kb downstream 5.0kb downstream 5000 false Bd3: 6261370-6266369 Brachypodium distachyon
Bradi3g08050 10.0kb upstream 10.0kb upstream 14297 true Bd3: 6247073-6261369 Brachypodium distachyon
Bradi3g08050 10.0kb upstream 10.0kb upstream 10000 false Bd3: 6247073-6257072 Brachypodium distachyon
Bradi3g08050 10.0kb downstream 10.0kb downstream 14297 true Bd3: 6257073-6271369 Brachypodium distachyon
Bradi3g08050 10.0kb downstream 10.0kb downstream 10000 false Bd3: 6261370-6271369 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026173 5273 Angiosperm View MSA
124582832 5269 Grass View MSA
121296213 5274 Embryophyte View MSA
123334415 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.306        
cufflinks 1.117       High
cufflinks 0.616        
cufflinks 0.946       High
cufflinks 0.231       Low
cufflinks 0.573        
cufflinks 0.794       High
cufflinks 0.357        
cufflinks 0.534        
cufflinks 0.385        
cufflinks 0.316        
cufflinks 0.468        
cufflinks 0.297        
cufflinks 0.234       Low
cufflinks 0.34        
cufflinks 0.537        
cufflinks 0.317        
cufflinks 0.716        
cufflinks 0.236       Low
cufflinks 0.192       Low
cufflinks 0.475        
cufflinks 0.535        
cufflinks 0.487        
cufflinks 0.473        
cufflinks 0.64        
cufflinks 0.486        
cufflinks 0.334        
cufflinks 0.403        
cufflinks 0.361        
cufflinks 0.636        

0 Strain