Gene : Bradi3g08590 B. distachyon v3.1
Defline:  (1 of 58) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1095
Name:  ? Bradi3g08590 Secondary Identifier:  ? PAC:32821375
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g08590 0.5kb upstream 0.5kb upstream 7395 true Bd3: 6776931-6784325 Brachypodium distachyon
Bradi3g08590 0.5kb upstream 0.5kb upstream 500 false Bd3: 6783826-6784325 Brachypodium distachyon
Bradi3g08590 0.5kb downstream 0.5kb downstream 7395 true Bd3: 6776431-6783825 Brachypodium distachyon
Bradi3g08590 0.5kb downstream 0.5kb downstream 500 false Bd3: 6776431-6776930 Brachypodium distachyon
Bradi3g08590 1.0kb upstream 1.0kb upstream 7895 true Bd3: 6776931-6784825 Brachypodium distachyon
Bradi3g08590 1.0kb upstream 1.0kb upstream 1000 false Bd3: 6783826-6784825 Brachypodium distachyon
Bradi3g08590 1.0kb downstream 1.0kb downstream 7895 true Bd3: 6775931-6783825 Brachypodium distachyon
Bradi3g08590 1.0kb downstream 1.0kb downstream 1000 false Bd3: 6775931-6776930 Brachypodium distachyon
Bradi3g08590 2.0kb upstream 2.0kb upstream 8895 true Bd3: 6776931-6785825 Brachypodium distachyon
Bradi3g08590 2.0kb upstream 2.0kb upstream 2000 false Bd3: 6783826-6785825 Brachypodium distachyon
Bradi3g08590 2.0kb downstream 2.0kb downstream 8895 true Bd3: 6774931-6783825 Brachypodium distachyon
Bradi3g08590 2.0kb downstream 2.0kb downstream 2000 false Bd3: 6774931-6776930 Brachypodium distachyon
Bradi3g08590 5.0kb upstream 5.0kb upstream 11895 true Bd3: 6776931-6788825 Brachypodium distachyon
Bradi3g08590 5.0kb upstream 5.0kb upstream 5000 false Bd3: 6783826-6788825 Brachypodium distachyon
Bradi3g08590 5.0kb downstream 5.0kb downstream 11895 true Bd3: 6771931-6783825 Brachypodium distachyon
Bradi3g08590 5.0kb downstream 5.0kb downstream 5000 false Bd3: 6771931-6776930 Brachypodium distachyon
Bradi3g08590 10.0kb upstream 10.0kb upstream 16895 true Bd3: 6776931-6793825 Brachypodium distachyon
Bradi3g08590 10.0kb upstream 10.0kb upstream 10000 false Bd3: 6783826-6793825 Brachypodium distachyon
Bradi3g08590 10.0kb downstream 10.0kb downstream 16895 true Bd3: 6766931-6783825 Brachypodium distachyon
Bradi3g08590 10.0kb downstream 10.0kb downstream 10000 false Bd3: 6766931-6776930 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576662 5269 Grass View MSA
122041926 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.055     Low  
cufflinks 0.168        
cufflinks 0.133        
cufflinks 0.161        
cufflinks 0.013     Low Low
cufflinks 0.133        
cufflinks 0.13        
cufflinks 0.101        
cufflinks 0.161        
cufflinks 0.071     Low  
cufflinks 0.083        
cufflinks 0.093        
cufflinks 0.049     Low  
cufflinks 0.048     Low  
cufflinks 0.031     Low Low
cufflinks 0.101        
cufflinks 0.027     Low Low
cufflinks 0.204       High
cufflinks 0.092     Low  
cufflinks 0.006     Low Low
cufflinks 0.085     Low  
cufflinks 0.099     Low  
cufflinks 0.102        
cufflinks 0.104     Low  
cufflinks 0.123        
cufflinks 0.105     Low  
cufflinks 0.077     Low  
cufflinks 0.086     Low  
cufflinks 0.09     Low  
cufflinks 0.139        

0 Strain