Gene : Bradi3g08530 B. distachyon v3.1
Defline:  (1 of 1) PTHR20889//PTHR20889:SF5 - PHOSPHATASE, ORPHAN 1, 2 // SUBFAMILY NOT NAMED Genomic Order:  1088
Name:  ? Bradi3g08530 Secondary Identifier:  ? PAC:32813072
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5083 Brachypodium distachyon pathologic  
Bdistachyon PWY-6348 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g08530 0.5kb upstream 0.5kb upstream 2366 true Bd3: 6731321-6733686 Brachypodium distachyon
Bradi3g08530 0.5kb upstream 0.5kb upstream 500 false Bd3: 6731321-6731820 Brachypodium distachyon
Bradi3g08530 0.5kb downstream 0.5kb downstream 2366 true Bd3: 6731821-6734186 Brachypodium distachyon
Bradi3g08530 0.5kb downstream 0.5kb downstream 500 false Bd3: 6733687-6734186 Brachypodium distachyon
Bradi3g08530 1.0kb upstream 1.0kb upstream 2866 true Bd3: 6730821-6733686 Brachypodium distachyon
Bradi3g08530 1.0kb upstream 1.0kb upstream 1000 false Bd3: 6730821-6731820 Brachypodium distachyon
Bradi3g08530 1.0kb downstream 1.0kb downstream 2866 true Bd3: 6731821-6734686 Brachypodium distachyon
Bradi3g08530 1.0kb downstream 1.0kb downstream 1000 false Bd3: 6733687-6734686 Brachypodium distachyon
Bradi3g08530 2.0kb upstream 2.0kb upstream 3866 true Bd3: 6729821-6733686 Brachypodium distachyon
Bradi3g08530 2.0kb upstream 2.0kb upstream 2000 false Bd3: 6729821-6731820 Brachypodium distachyon
Bradi3g08530 2.0kb downstream 2.0kb downstream 3866 true Bd3: 6731821-6735686 Brachypodium distachyon
Bradi3g08530 2.0kb downstream 2.0kb downstream 2000 false Bd3: 6733687-6735686 Brachypodium distachyon
Bradi3g08530 5.0kb upstream 5.0kb upstream 6866 true Bd3: 6726821-6733686 Brachypodium distachyon
Bradi3g08530 5.0kb upstream 5.0kb upstream 5000 false Bd3: 6726821-6731820 Brachypodium distachyon
Bradi3g08530 5.0kb downstream 5.0kb downstream 6866 true Bd3: 6731821-6738686 Brachypodium distachyon
Bradi3g08530 5.0kb downstream 5.0kb downstream 5000 false Bd3: 6733687-6738686 Brachypodium distachyon
Bradi3g08530 10.0kb upstream 10.0kb upstream 11866 true Bd3: 6721821-6733686 Brachypodium distachyon
Bradi3g08530 10.0kb upstream 10.0kb upstream 10000 false Bd3: 6721821-6731820 Brachypodium distachyon
Bradi3g08530 10.0kb downstream 10.0kb downstream 11866 true Bd3: 6731821-6743686 Brachypodium distachyon
Bradi3g08530 10.0kb downstream 10.0kb downstream 10000 false Bd3: 6733687-6743686 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041363 5273 Angiosperm View MSA
124572114 5269 Grass View MSA
121350912 5274 Embryophyte View MSA
123426221 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.033     Low  
cufflinks 0.163        
cufflinks 0.113        
cufflinks 0.22        
cufflinks 0.031     Low  
cufflinks 0.193        
cufflinks 0.31        
cufflinks 0.097        
cufflinks 0.256        
cufflinks 0.026     Low  
cufflinks 0.009     Low Low
cufflinks 0.044     Low  
cufflinks 0.031     Low  
cufflinks 0.04     Low  
cufflinks 0.039     Low  
cufflinks 0.131        
cufflinks 0.069     Low  
cufflinks 6.003       High
cufflinks 0.143     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.12       High
cufflinks 0.016     Low Low
cufflinks 0.107        
cufflinks 0.194        
cufflinks 0.212        
cufflinks 0.018     Low Low
cufflinks 0.041     Low  
cufflinks 0.061     Low  
cufflinks 0.007     Low Low
cufflinks 0.095     Low  

0 Strain