Gene : Bradi3g08910 B. distachyon v3.1
Defline:  (1 of 1) PTHR11739:SF4 - CITRATE SYNTHASE, PEROXISOMAL Genomic Order:  1135
Name:  ? Bradi3g08910 Secondary Identifier:  ? PAC:32814742
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLYOXYLATE-BYPASS Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-5690 Brachypodium distachyon pathologic  
Bdistachyon PWY-5913 Brachypodium distachyon pathologic  
Bdistachyon PWY-6549 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g08910 0.5kb upstream 0.5kb upstream 7137 true Bd3: 7028102-7035238 Brachypodium distachyon
Bradi3g08910 0.5kb upstream 0.5kb upstream 500 false Bd3: 7028102-7028601 Brachypodium distachyon
Bradi3g08910 0.5kb downstream 0.5kb downstream 7137 true Bd3: 7028602-7035738 Brachypodium distachyon
Bradi3g08910 0.5kb downstream 0.5kb downstream 500 false Bd3: 7035239-7035738 Brachypodium distachyon
Bradi3g08910 1.0kb upstream 1.0kb upstream 7637 true Bd3: 7027602-7035238 Brachypodium distachyon
Bradi3g08910 1.0kb upstream 1.0kb upstream 1000 false Bd3: 7027602-7028601 Brachypodium distachyon
Bradi3g08910 1.0kb downstream 1.0kb downstream 7637 true Bd3: 7028602-7036238 Brachypodium distachyon
Bradi3g08910 1.0kb downstream 1.0kb downstream 1000 false Bd3: 7035239-7036238 Brachypodium distachyon
Bradi3g08910 2.0kb upstream 2.0kb upstream 8637 true Bd3: 7026602-7035238 Brachypodium distachyon
Bradi3g08910 2.0kb upstream 2.0kb upstream 2000 false Bd3: 7026602-7028601 Brachypodium distachyon
Bradi3g08910 2.0kb downstream 2.0kb downstream 8637 true Bd3: 7028602-7037238 Brachypodium distachyon
Bradi3g08910 2.0kb downstream 2.0kb downstream 2000 false Bd3: 7035239-7037238 Brachypodium distachyon
Bradi3g08910 5.0kb upstream 5.0kb upstream 11637 true Bd3: 7023602-7035238 Brachypodium distachyon
Bradi3g08910 5.0kb upstream 5.0kb upstream 5000 false Bd3: 7023602-7028601 Brachypodium distachyon
Bradi3g08910 5.0kb downstream 5.0kb downstream 11637 true Bd3: 7028602-7040238 Brachypodium distachyon
Bradi3g08910 5.0kb downstream 5.0kb downstream 5000 false Bd3: 7035239-7040238 Brachypodium distachyon
Bradi3g08910 10.0kb upstream 10.0kb upstream 16637 true Bd3: 7018602-7035238 Brachypodium distachyon
Bradi3g08910 10.0kb upstream 10.0kb upstream 10000 false Bd3: 7018602-7028601 Brachypodium distachyon
Bradi3g08910 10.0kb downstream 10.0kb downstream 16637 true Bd3: 7028602-7045238 Brachypodium distachyon
Bradi3g08910 10.0kb downstream 10.0kb downstream 10000 false Bd3: 7035239-7045238 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570333 5269 Grass View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.084     High  
cufflinks 13.371     High  
cufflinks 14.162     High  
cufflinks 12.725     High  
cufflinks 8.582       Low
cufflinks 11.203     High  
cufflinks 12.3     High  
cufflinks 10.232     High  
cufflinks 10.501     High  
cufflinks 9.014        
cufflinks 9.668     High  
cufflinks 10.801     High  
cufflinks 9.69     High  
cufflinks 8.831     High Low
cufflinks 9.256     High  
cufflinks 11.634     High  
cufflinks 11.676     High  
cufflinks 24.703     High High
cufflinks 22.437     High High
cufflinks 20.27     High High
cufflinks 13.538     High  
cufflinks 11.988     High  
cufflinks 9.888     High  
cufflinks 10.531     High  
cufflinks 9.475        
cufflinks 13.464     High  
cufflinks 9.591     High  
cufflinks 13.418     High  
cufflinks 11.747     High  
cufflinks 13.427     High  

0 Strain