Gene : Bradi3g09110 B. distachyon v3.1
Defline:  (1 of 1) PTHR11558//PTHR11558:SF30 - SPERMIDINE/SPERMINE SYNTHASE Genomic Order:  1164
Name:  ? Bradi3g09110 Secondary Identifier:  ? PAC:32819030
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon BSUBPOLYAMSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon POLYAMINSYN3-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-7528 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g09110 0.5kb upstream 0.5kb upstream 2895 true Bd3: 7217573-7220467 Brachypodium distachyon
Bradi3g09110 0.5kb upstream 0.5kb upstream 500 false Bd3: 7219968-7220467 Brachypodium distachyon
Bradi3g09110 0.5kb downstream 0.5kb downstream 2895 true Bd3: 7217073-7219967 Brachypodium distachyon
Bradi3g09110 0.5kb downstream 0.5kb downstream 500 false Bd3: 7217073-7217572 Brachypodium distachyon
Bradi3g09110 1.0kb upstream 1.0kb upstream 3395 true Bd3: 7217573-7220967 Brachypodium distachyon
Bradi3g09110 1.0kb upstream 1.0kb upstream 1000 false Bd3: 7219968-7220967 Brachypodium distachyon
Bradi3g09110 1.0kb downstream 1.0kb downstream 3395 true Bd3: 7216573-7219967 Brachypodium distachyon
Bradi3g09110 1.0kb downstream 1.0kb downstream 1000 false Bd3: 7216573-7217572 Brachypodium distachyon
Bradi3g09110 2.0kb upstream 2.0kb upstream 4395 true Bd3: 7217573-7221967 Brachypodium distachyon
Bradi3g09110 2.0kb upstream 2.0kb upstream 2000 false Bd3: 7219968-7221967 Brachypodium distachyon
Bradi3g09110 2.0kb downstream 2.0kb downstream 4395 true Bd3: 7215573-7219967 Brachypodium distachyon
Bradi3g09110 2.0kb downstream 2.0kb downstream 2000 false Bd3: 7215573-7217572 Brachypodium distachyon
Bradi3g09110 5.0kb upstream 5.0kb upstream 7395 true Bd3: 7217573-7224967 Brachypodium distachyon
Bradi3g09110 5.0kb upstream 5.0kb upstream 5000 false Bd3: 7219968-7224967 Brachypodium distachyon
Bradi3g09110 5.0kb downstream 5.0kb downstream 7395 true Bd3: 7212573-7219967 Brachypodium distachyon
Bradi3g09110 5.0kb downstream 5.0kb downstream 5000 false Bd3: 7212573-7217572 Brachypodium distachyon
Bradi3g09110 10.0kb upstream 10.0kb upstream 12395 true Bd3: 7217573-7229967 Brachypodium distachyon
Bradi3g09110 10.0kb upstream 10.0kb upstream 10000 false Bd3: 7219968-7229967 Brachypodium distachyon
Bradi3g09110 10.0kb downstream 10.0kb downstream 12395 true Bd3: 7207573-7219967 Brachypodium distachyon
Bradi3g09110 10.0kb downstream 10.0kb downstream 10000 false Bd3: 7207573-7217572 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590287 5269 Grass View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.029     Low  
cufflinks 0.013     Low  
cufflinks 0.027     Low  
cufflinks 0.018     Low  
cufflinks 0.013     Low  
cufflinks 0.025     Low  
cufflinks 0.035     Low  
cufflinks 0.012     Low  
cufflinks 0.022     Low  
cufflinks 0.02     Low  
cufflinks 0.005     Low  
cufflinks 0.02     Low  
cufflinks 0.002     Low Low
cufflinks 0.001     Low Low
cufflinks 0.018     Low  
cufflinks 0.022     Low  
cufflinks 0.05     Low  
cufflinks 1.493       High
cufflinks 0.007     Low  
cufflinks 0.037     Low  
cufflinks 1.746       High
cufflinks 0.026     Low  
cufflinks 0.012     Low  
cufflinks 0.012     Low  
cufflinks 0.023     Low  
cufflinks 0.056     Low  
cufflinks 0.016     Low  
cufflinks 0.035     Low  
cufflinks 0.026     Low  
cufflinks 0.076     Low  

0 Strain