Gene : Bradi4g43080 B. distachyon v3.1
Defline:  (1 of 2) PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Genomic Order:  5556
Name:  ? Bradi4g43080 Secondary Identifier:  ? PAC:32786680
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g43080 0.5kb upstream 0.5kb upstream 4199 true Bd4: 46838946-46843144 Brachypodium distachyon
Bradi4g43080 0.5kb upstream 0.5kb upstream 500 false Bd4: 46838946-46839445 Brachypodium distachyon
Bradi4g43080 0.5kb downstream 0.5kb downstream 4199 true Bd4: 46839446-46843644 Brachypodium distachyon
Bradi4g43080 0.5kb downstream 0.5kb downstream 500 false Bd4: 46843145-46843644 Brachypodium distachyon
Bradi4g43080 1.0kb upstream 1.0kb upstream 4699 true Bd4: 46838446-46843144 Brachypodium distachyon
Bradi4g43080 1.0kb upstream 1.0kb upstream 1000 false Bd4: 46838446-46839445 Brachypodium distachyon
Bradi4g43080 1.0kb downstream 1.0kb downstream 4699 true Bd4: 46839446-46844144 Brachypodium distachyon
Bradi4g43080 1.0kb downstream 1.0kb downstream 1000 false Bd4: 46843145-46844144 Brachypodium distachyon
Bradi4g43080 2.0kb upstream 2.0kb upstream 5699 true Bd4: 46837446-46843144 Brachypodium distachyon
Bradi4g43080 2.0kb upstream 2.0kb upstream 2000 false Bd4: 46837446-46839445 Brachypodium distachyon
Bradi4g43080 2.0kb downstream 2.0kb downstream 5699 true Bd4: 46839446-46845144 Brachypodium distachyon
Bradi4g43080 2.0kb downstream 2.0kb downstream 2000 false Bd4: 46843145-46845144 Brachypodium distachyon
Bradi4g43080 5.0kb upstream 5.0kb upstream 8699 true Bd4: 46834446-46843144 Brachypodium distachyon
Bradi4g43080 5.0kb upstream 5.0kb upstream 5000 false Bd4: 46834446-46839445 Brachypodium distachyon
Bradi4g43080 5.0kb downstream 5.0kb downstream 8699 true Bd4: 46839446-46848144 Brachypodium distachyon
Bradi4g43080 5.0kb downstream 5.0kb downstream 5000 false Bd4: 46843145-46848144 Brachypodium distachyon
Bradi4g43080 10.0kb upstream 10.0kb upstream 13699 true Bd4: 46829446-46843144 Brachypodium distachyon
Bradi4g43080 10.0kb upstream 10.0kb upstream 10000 false Bd4: 46829446-46839445 Brachypodium distachyon
Bradi4g43080 10.0kb downstream 10.0kb downstream 13699 true Bd4: 46839446-46853144 Brachypodium distachyon
Bradi4g43080 10.0kb downstream 10.0kb downstream 10000 false Bd4: 46843145-46853144 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124545008 5269 Grass View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.233        
cufflinks 0.15        
cufflinks 0.138        
cufflinks 0.123        
cufflinks 0.172        
cufflinks 0.109        
cufflinks 0.151        
cufflinks 0.138        
cufflinks 0.116        
cufflinks 0.164        
cufflinks 0.046     Low Low
cufflinks 0.114        
cufflinks 0.035     Low Low
cufflinks 0.033     Low Low
cufflinks 0.078        
cufflinks 0.166        
cufflinks 0.392       High
cufflinks 0.144     Low  
cufflinks 0.413       High
cufflinks 0.075     Low  
cufflinks 0.245        
cufflinks 0.157        
cufflinks 0.088        
cufflinks 0.158        
cufflinks 0.118        
cufflinks 0.325       High
cufflinks 0.094        
cufflinks 0.185        
cufflinks 0.132        
cufflinks 0.342       High

0 Strain