Gene : Bradi3g09660 B. distachyon v3.1
Defline:  (1 of 1) PTHR11177:SF92 - CHITINASE DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1241
Name:  ? Bradi3g09660 Secondary Identifier:  ? PAC:32821135
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g09660 0.5kb upstream 0.5kb upstream 4739 true Bd3: 7841380-7846118 Brachypodium distachyon
Bradi3g09660 0.5kb upstream 0.5kb upstream 500 false Bd3: 7841380-7841879 Brachypodium distachyon
Bradi3g09660 0.5kb downstream 0.5kb downstream 4739 true Bd3: 7841880-7846618 Brachypodium distachyon
Bradi3g09660 0.5kb downstream 0.5kb downstream 500 false Bd3: 7846119-7846618 Brachypodium distachyon
Bradi3g09660 1.0kb upstream 1.0kb upstream 5239 true Bd3: 7840880-7846118 Brachypodium distachyon
Bradi3g09660 1.0kb upstream 1.0kb upstream 1000 false Bd3: 7840880-7841879 Brachypodium distachyon
Bradi3g09660 1.0kb downstream 1.0kb downstream 5239 true Bd3: 7841880-7847118 Brachypodium distachyon
Bradi3g09660 1.0kb downstream 1.0kb downstream 1000 false Bd3: 7846119-7847118 Brachypodium distachyon
Bradi3g09660 2.0kb upstream 2.0kb upstream 6239 true Bd3: 7839880-7846118 Brachypodium distachyon
Bradi3g09660 2.0kb upstream 2.0kb upstream 2000 false Bd3: 7839880-7841879 Brachypodium distachyon
Bradi3g09660 2.0kb downstream 2.0kb downstream 6239 true Bd3: 7841880-7848118 Brachypodium distachyon
Bradi3g09660 2.0kb downstream 2.0kb downstream 2000 false Bd3: 7846119-7848118 Brachypodium distachyon
Bradi3g09660 5.0kb upstream 5.0kb upstream 9239 true Bd3: 7836880-7846118 Brachypodium distachyon
Bradi3g09660 5.0kb upstream 5.0kb upstream 5000 false Bd3: 7836880-7841879 Brachypodium distachyon
Bradi3g09660 5.0kb downstream 5.0kb downstream 9239 true Bd3: 7841880-7851118 Brachypodium distachyon
Bradi3g09660 5.0kb downstream 5.0kb downstream 5000 false Bd3: 7846119-7851118 Brachypodium distachyon
Bradi3g09660 10.0kb upstream 10.0kb upstream 14239 true Bd3: 7831880-7846118 Brachypodium distachyon
Bradi3g09660 10.0kb upstream 10.0kb upstream 10000 false Bd3: 7831880-7841879 Brachypodium distachyon
Bradi3g09660 10.0kb downstream 10.0kb downstream 14239 true Bd3: 7841880-7856118 Brachypodium distachyon
Bradi3g09660 10.0kb downstream 10.0kb downstream 10000 false Bd3: 7846119-7856118 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573424 5269 Grass View MSA
122044286 5273 Angiosperm View MSA
121344422 5274 Embryophyte View MSA
123425945 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 92.166     High  
cufflinks 118.263     High  
cufflinks 101.22     High  
cufflinks 118.92     High  
cufflinks 74.905     High  
cufflinks 127.766     High  
cufflinks 118.366     High  
cufflinks 112.41     High  
cufflinks 122.081     High  
cufflinks 103.008     High  
cufflinks 72.024     High  
cufflinks 114.386     High  
cufflinks 136.425     High  
cufflinks 109.639     High  
cufflinks 81.384     High  
cufflinks 132.044     High  
cufflinks 104.993     High  
cufflinks 4.485       Low
cufflinks 65.57     High  
cufflinks 20.694     High Low
cufflinks 62.208     High  
cufflinks 108.218     High  
cufflinks 111.411     High  
cufflinks 126.937     High  
cufflinks 129.142     High  
cufflinks 98.371     High  
cufflinks 77.145     High  
cufflinks 95.033     High  
cufflinks 112.919     High  
cufflinks 82.051     High  

0 Strain