Gene : Bradi3g09540 B. distachyon v3.1
Defline:  (1 of 1) 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  1224
Name:  ? Bradi3g09540 Secondary Identifier:  ? PAC:32818093
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ARGSPECAT-PWY Brachypodium distachyon pathologic  
Bdistachyon BSUBPOLYAMSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon POLYAMINSYN3-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-7528 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g09540 0.5kb upstream 0.5kb upstream 7855 true Bd3: 7680381-7688235 Brachypodium distachyon
Bradi3g09540 0.5kb upstream 0.5kb upstream 500 false Bd3: 7687736-7688235 Brachypodium distachyon
Bradi3g09540 0.5kb downstream 0.5kb downstream 7855 true Bd3: 7679881-7687735 Brachypodium distachyon
Bradi3g09540 0.5kb downstream 0.5kb downstream 500 false Bd3: 7679881-7680380 Brachypodium distachyon
Bradi3g09540 1.0kb upstream 1.0kb upstream 8355 true Bd3: 7680381-7688735 Brachypodium distachyon
Bradi3g09540 1.0kb upstream 1.0kb upstream 1000 false Bd3: 7687736-7688735 Brachypodium distachyon
Bradi3g09540 1.0kb downstream 1.0kb downstream 8355 true Bd3: 7679381-7687735 Brachypodium distachyon
Bradi3g09540 1.0kb downstream 1.0kb downstream 1000 false Bd3: 7679381-7680380 Brachypodium distachyon
Bradi3g09540 2.0kb upstream 2.0kb upstream 9355 true Bd3: 7680381-7689735 Brachypodium distachyon
Bradi3g09540 2.0kb upstream 2.0kb upstream 2000 false Bd3: 7687736-7689735 Brachypodium distachyon
Bradi3g09540 2.0kb downstream 2.0kb downstream 9355 true Bd3: 7678381-7687735 Brachypodium distachyon
Bradi3g09540 2.0kb downstream 2.0kb downstream 2000 false Bd3: 7678381-7680380 Brachypodium distachyon
Bradi3g09540 5.0kb upstream 5.0kb upstream 12355 true Bd3: 7680381-7692735 Brachypodium distachyon
Bradi3g09540 5.0kb upstream 5.0kb upstream 5000 false Bd3: 7687736-7692735 Brachypodium distachyon
Bradi3g09540 5.0kb downstream 5.0kb downstream 12355 true Bd3: 7675381-7687735 Brachypodium distachyon
Bradi3g09540 5.0kb downstream 5.0kb downstream 5000 false Bd3: 7675381-7680380 Brachypodium distachyon
Bradi3g09540 10.0kb upstream 10.0kb upstream 17355 true Bd3: 7680381-7697735 Brachypodium distachyon
Bradi3g09540 10.0kb upstream 10.0kb upstream 10000 false Bd3: 7687736-7697735 Brachypodium distachyon
Bradi3g09540 10.0kb downstream 10.0kb downstream 17355 true Bd3: 7670381-7687735 Brachypodium distachyon
Bradi3g09540 10.0kb downstream 10.0kb downstream 10000 false Bd3: 7670381-7680380 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577053 5269 Grass View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.396        
cufflinks 6.039        
cufflinks 7.811       High
cufflinks 5.823        
cufflinks 4.55        
cufflinks 4.886        
cufflinks 4.921        
cufflinks 4.934        
cufflinks 5.095        
cufflinks 5.839        
cufflinks 5.733        
cufflinks 5.569        
cufflinks 5.1        
cufflinks 4.818        
cufflinks 5.115        
cufflinks 5.089        
cufflinks 4.917        
cufflinks 6.67        
cufflinks 6.199        
cufflinks 5.062        
cufflinks 5.377        
cufflinks 7.835       High
cufflinks 5.206        
cufflinks 4.889        
cufflinks 4.964        
cufflinks 7.285        
cufflinks 4.122       Low
cufflinks 7.021        
cufflinks 6.749        
cufflinks 6.121        

0 Strain