Gene : Bradi3g09520 B. distachyon v3.1
Defline:  (1 of 1) PTHR31989:SF48 - PROTEIN SOMBRERO Genomic Order:  1218
Name:  ? Bradi3g09520 Secondary Identifier:  ? PAC:32820798
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g09520 0.5kb upstream 0.5kb upstream 4391 true Bd3: 7647409-7651799 Brachypodium distachyon
Bradi3g09520 0.5kb upstream 0.5kb upstream 500 false Bd3: 7647409-7647908 Brachypodium distachyon
Bradi3g09520 0.5kb downstream 0.5kb downstream 4391 true Bd3: 7647909-7652299 Brachypodium distachyon
Bradi3g09520 0.5kb downstream 0.5kb downstream 500 false Bd3: 7651800-7652299 Brachypodium distachyon
Bradi3g09520 1.0kb upstream 1.0kb upstream 4891 true Bd3: 7646909-7651799 Brachypodium distachyon
Bradi3g09520 1.0kb upstream 1.0kb upstream 1000 false Bd3: 7646909-7647908 Brachypodium distachyon
Bradi3g09520 1.0kb downstream 1.0kb downstream 4891 true Bd3: 7647909-7652799 Brachypodium distachyon
Bradi3g09520 1.0kb downstream 1.0kb downstream 1000 false Bd3: 7651800-7652799 Brachypodium distachyon
Bradi3g09520 2.0kb upstream 2.0kb upstream 5891 true Bd3: 7645909-7651799 Brachypodium distachyon
Bradi3g09520 2.0kb upstream 2.0kb upstream 2000 false Bd3: 7645909-7647908 Brachypodium distachyon
Bradi3g09520 2.0kb downstream 2.0kb downstream 5891 true Bd3: 7647909-7653799 Brachypodium distachyon
Bradi3g09520 2.0kb downstream 2.0kb downstream 2000 false Bd3: 7651800-7653799 Brachypodium distachyon
Bradi3g09520 5.0kb upstream 5.0kb upstream 8891 true Bd3: 7642909-7651799 Brachypodium distachyon
Bradi3g09520 5.0kb upstream 5.0kb upstream 5000 false Bd3: 7642909-7647908 Brachypodium distachyon
Bradi3g09520 5.0kb downstream 5.0kb downstream 8891 true Bd3: 7647909-7656799 Brachypodium distachyon
Bradi3g09520 5.0kb downstream 5.0kb downstream 5000 false Bd3: 7651800-7656799 Brachypodium distachyon
Bradi3g09520 10.0kb upstream 10.0kb upstream 13891 true Bd3: 7637909-7651799 Brachypodium distachyon
Bradi3g09520 10.0kb upstream 10.0kb upstream 10000 false Bd3: 7637909-7647908 Brachypodium distachyon
Bradi3g09520 10.0kb downstream 10.0kb downstream 13891 true Bd3: 7647909-7661799 Brachypodium distachyon
Bradi3g09520 10.0kb downstream 10.0kb downstream 10000 false Bd3: 7651800-7661799 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580563 5269 Grass View MSA
122045964 5273 Angiosperm View MSA
121351431 5274 Embryophyte View MSA
123382163 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low  
cufflinks 0.002     Low Low
cufflinks 0.017     Low  
cufflinks 0.016     Low  
cufflinks 0.013     Low  
cufflinks 0.003     Low  
cufflinks 0.007     Low  
cufflinks 0.002     Low Low
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.348       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.007     Low  
cufflinks 0.008     Low  
cufflinks 0.004     Low  
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  

0 Strain