Gene : Bradi4g43130 B. distachyon v3.1
Defline:  (1 of 1) 2.3.3.13 - 2-isopropylmalate synthase / Isopropylmalate synthetase Genomic Order:  5566
Name:  ? Bradi4g43130 Secondary Identifier:  ? PAC:32786814
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon BRANCHED-CHAIN-AA-SYN-PWY Brachypodium distachyon pathologic  
Bdistachyon LEUSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g43130 0.5kb upstream 0.5kb upstream 7396 true Bd4: 46894484-46901879 Brachypodium distachyon
Bradi4g43130 0.5kb upstream 0.5kb upstream 500 false Bd4: 46901380-46901879 Brachypodium distachyon
Bradi4g43130 0.5kb downstream 0.5kb downstream 7396 true Bd4: 46893984-46901379 Brachypodium distachyon
Bradi4g43130 0.5kb downstream 0.5kb downstream 500 false Bd4: 46893984-46894483 Brachypodium distachyon
Bradi4g43130 1.0kb upstream 1.0kb upstream 7896 true Bd4: 46894484-46902379 Brachypodium distachyon
Bradi4g43130 1.0kb upstream 1.0kb upstream 1000 false Bd4: 46901380-46902379 Brachypodium distachyon
Bradi4g43130 1.0kb downstream 1.0kb downstream 7896 true Bd4: 46893484-46901379 Brachypodium distachyon
Bradi4g43130 1.0kb downstream 1.0kb downstream 1000 false Bd4: 46893484-46894483 Brachypodium distachyon
Bradi4g43130 2.0kb upstream 2.0kb upstream 8896 true Bd4: 46894484-46903379 Brachypodium distachyon
Bradi4g43130 2.0kb upstream 2.0kb upstream 2000 false Bd4: 46901380-46903379 Brachypodium distachyon
Bradi4g43130 2.0kb downstream 2.0kb downstream 8896 true Bd4: 46892484-46901379 Brachypodium distachyon
Bradi4g43130 2.0kb downstream 2.0kb downstream 2000 false Bd4: 46892484-46894483 Brachypodium distachyon
Bradi4g43130 5.0kb upstream 5.0kb upstream 11896 true Bd4: 46894484-46906379 Brachypodium distachyon
Bradi4g43130 5.0kb upstream 5.0kb upstream 5000 false Bd4: 46901380-46906379 Brachypodium distachyon
Bradi4g43130 5.0kb downstream 5.0kb downstream 11896 true Bd4: 46889484-46901379 Brachypodium distachyon
Bradi4g43130 5.0kb downstream 5.0kb downstream 5000 false Bd4: 46889484-46894483 Brachypodium distachyon
Bradi4g43130 10.0kb upstream 10.0kb upstream 16896 true Bd4: 46894484-46911379 Brachypodium distachyon
Bradi4g43130 10.0kb upstream 10.0kb upstream 10000 false Bd4: 46901380-46911379 Brachypodium distachyon
Bradi4g43130 10.0kb downstream 10.0kb downstream 16896 true Bd4: 46884484-46901379 Brachypodium distachyon
Bradi4g43130 10.0kb downstream 10.0kb downstream 10000 false Bd4: 46884484-46894483 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568273 5269 Grass View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.801     High  
cufflinks 19.787     High  
cufflinks 23.737     High High
cufflinks 17.47     High  
cufflinks 7.601       Low
cufflinks 14.91     High  
cufflinks 18.938     High  
cufflinks 13.019     High  
cufflinks 13.622     High  
cufflinks 17.578     High  
cufflinks 14.46     High  
cufflinks 13.809     High  
cufflinks 11.616     High  
cufflinks 10.845     High  
cufflinks 9.304     High Low
cufflinks 17.701     High  
cufflinks 12.624     High  
cufflinks 31.962     High High
cufflinks 19.218     High  
cufflinks 11.646     High  
cufflinks 16.623     High  
cufflinks 18.897     High  
cufflinks 12.626     High  
cufflinks 11.945     High  
cufflinks 14.746     High  
cufflinks 23.888     High High
cufflinks 10.155     High Low
cufflinks 22.479     High High
cufflinks 19.805     High  
cufflinks 19.642     High  

0 Strain