Gene : Bradi3g05900 B. distachyon v3.1
Defline:  (1 of 2) KOG3197 - Predicted hydrolases of HD superfamily Genomic Order:  724
Name:  ? Bradi3g05900 Secondary Identifier:  ? PAC:32818236
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g05900 0.5kb upstream 0.5kb upstream 4053 true Bd3: 4204247-4208299 Brachypodium distachyon
Bradi3g05900 0.5kb upstream 0.5kb upstream 500 false Bd3: 4204247-4204746 Brachypodium distachyon
Bradi3g05900 0.5kb downstream 0.5kb downstream 4053 true Bd3: 4204747-4208799 Brachypodium distachyon
Bradi3g05900 0.5kb downstream 0.5kb downstream 500 false Bd3: 4208300-4208799 Brachypodium distachyon
Bradi3g05900 1.0kb upstream 1.0kb upstream 4553 true Bd3: 4203747-4208299 Brachypodium distachyon
Bradi3g05900 1.0kb upstream 1.0kb upstream 1000 false Bd3: 4203747-4204746 Brachypodium distachyon
Bradi3g05900 1.0kb downstream 1.0kb downstream 4553 true Bd3: 4204747-4209299 Brachypodium distachyon
Bradi3g05900 1.0kb downstream 1.0kb downstream 1000 false Bd3: 4208300-4209299 Brachypodium distachyon
Bradi3g05900 2.0kb upstream 2.0kb upstream 5553 true Bd3: 4202747-4208299 Brachypodium distachyon
Bradi3g05900 2.0kb upstream 2.0kb upstream 2000 false Bd3: 4202747-4204746 Brachypodium distachyon
Bradi3g05900 2.0kb downstream 2.0kb downstream 5553 true Bd3: 4204747-4210299 Brachypodium distachyon
Bradi3g05900 2.0kb downstream 2.0kb downstream 2000 false Bd3: 4208300-4210299 Brachypodium distachyon
Bradi3g05900 5.0kb upstream 5.0kb upstream 8553 true Bd3: 4199747-4208299 Brachypodium distachyon
Bradi3g05900 5.0kb upstream 5.0kb upstream 5000 false Bd3: 4199747-4204746 Brachypodium distachyon
Bradi3g05900 5.0kb downstream 5.0kb downstream 8553 true Bd3: 4204747-4213299 Brachypodium distachyon
Bradi3g05900 5.0kb downstream 5.0kb downstream 5000 false Bd3: 4208300-4213299 Brachypodium distachyon
Bradi3g05900 10.0kb upstream 10.0kb upstream 13553 true Bd3: 4194747-4208299 Brachypodium distachyon
Bradi3g05900 10.0kb upstream 10.0kb upstream 10000 false Bd3: 4194747-4204746 Brachypodium distachyon
Bradi3g05900 10.0kb downstream 10.0kb downstream 13553 true Bd3: 4204747-4218299 Brachypodium distachyon
Bradi3g05900 10.0kb downstream 10.0kb downstream 10000 false Bd3: 4208300-4218299 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572854 5269 Grass View MSA
122044292 5273 Angiosperm View MSA
121348653 5274 Embryophyte View MSA
123428569 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.785        
cufflinks 11.46     High  
cufflinks 7.203        
cufflinks 8.93        
cufflinks 22.515     High High
cufflinks 10.891     High  
cufflinks 12.802     High High
cufflinks 9.889     High  
cufflinks 10.429     High  
cufflinks 6.332        
cufflinks 6.78        
cufflinks 7.836        
cufflinks 10.254     High  
cufflinks 7.351        
cufflinks 6.241        
cufflinks 10.333     High  
cufflinks 9.791        
cufflinks 4.19       Low
cufflinks 18.042     High High
cufflinks 4.51       Low
cufflinks 5.142       Low
cufflinks 7.612        
cufflinks 11.066     High  
cufflinks 12.644     High High
cufflinks 11.885     High High
cufflinks 6.385        
cufflinks 4.215       Low
cufflinks 6.001        
cufflinks 6.267        
cufflinks 6.337        

0 Strain