Gene : Bradi3g06597 B. distachyon v3.1
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  824
Name:  ? Bradi3g06597 Secondary Identifier:  ? PAC:32813989
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5943 Brachypodium distachyon pathologic  
Bdistachyon PWY-5947 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g06597 0.5kb upstream 0.5kb upstream 2300 true Bd3: 4802014-4804313 Brachypodium distachyon
Bradi3g06597 0.5kb upstream 0.5kb upstream 500 false Bd3: 4803814-4804313 Brachypodium distachyon
Bradi3g06597 0.5kb downstream 0.5kb downstream 2300 true Bd3: 4801514-4803813 Brachypodium distachyon
Bradi3g06597 0.5kb downstream 0.5kb downstream 500 false Bd3: 4801514-4802013 Brachypodium distachyon
Bradi3g06597 1.0kb upstream 1.0kb upstream 2800 true Bd3: 4802014-4804813 Brachypodium distachyon
Bradi3g06597 1.0kb upstream 1.0kb upstream 1000 false Bd3: 4803814-4804813 Brachypodium distachyon
Bradi3g06597 1.0kb downstream 1.0kb downstream 2800 true Bd3: 4801014-4803813 Brachypodium distachyon
Bradi3g06597 1.0kb downstream 1.0kb downstream 1000 false Bd3: 4801014-4802013 Brachypodium distachyon
Bradi3g06597 2.0kb upstream 2.0kb upstream 3800 true Bd3: 4802014-4805813 Brachypodium distachyon
Bradi3g06597 2.0kb upstream 2.0kb upstream 2000 false Bd3: 4803814-4805813 Brachypodium distachyon
Bradi3g06597 2.0kb downstream 2.0kb downstream 3800 true Bd3: 4800014-4803813 Brachypodium distachyon
Bradi3g06597 2.0kb downstream 2.0kb downstream 2000 false Bd3: 4800014-4802013 Brachypodium distachyon
Bradi3g06597 5.0kb upstream 5.0kb upstream 6800 true Bd3: 4802014-4808813 Brachypodium distachyon
Bradi3g06597 5.0kb upstream 5.0kb upstream 5000 false Bd3: 4803814-4808813 Brachypodium distachyon
Bradi3g06597 5.0kb downstream 5.0kb downstream 6800 true Bd3: 4797014-4803813 Brachypodium distachyon
Bradi3g06597 5.0kb downstream 5.0kb downstream 5000 false Bd3: 4797014-4802013 Brachypodium distachyon
Bradi3g06597 10.0kb upstream 10.0kb upstream 11800 true Bd3: 4802014-4813813 Brachypodium distachyon
Bradi3g06597 10.0kb upstream 10.0kb upstream 10000 false Bd3: 4803814-4813813 Brachypodium distachyon
Bradi3g06597 10.0kb downstream 10.0kb downstream 11800 true Bd3: 4792014-4803813 Brachypodium distachyon
Bradi3g06597 10.0kb downstream 10.0kb downstream 10000 false Bd3: 4792014-4802013 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579476 5269 Grass View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.784     High  
cufflinks 17.484     High  
cufflinks 20.824     High  
cufflinks 21.171     High  
cufflinks 8.956     High  
cufflinks 15.875     High  
cufflinks 18.064     High  
cufflinks 19.836     High  
cufflinks 18.312     High  
cufflinks 16.702     High  
cufflinks 14.16     High  
cufflinks 12.341     High  
cufflinks 15.761     High  
cufflinks 20.41     High  
cufflinks 19.832     High  
cufflinks 15.864     High  
cufflinks 16.856     High  
cufflinks 3.468       Low
cufflinks 20.868     High  
cufflinks 10.841        
cufflinks 10.487        
cufflinks 15.751     High  
cufflinks 24.97     High  
cufflinks 21.427     High  
cufflinks 20.517     High  
cufflinks 20.88     High  
cufflinks 29.378     High High
cufflinks 25.354     High High
cufflinks 27.546     High High
cufflinks 7.809       Low

0 Strain