Gene : Bradi4g43800 B. distachyon v3.1
Defline:  (1 of 62) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  5643
Name:  ? Bradi4g43800 Secondary Identifier:  ? PAC:32785718
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g43800 0.5kb upstream 0.5kb upstream 1781 true Bd4: 47314661-47316441 Brachypodium distachyon
Bradi4g43800 0.5kb upstream 0.5kb upstream 500 false Bd4: 47314661-47315160 Brachypodium distachyon
Bradi4g43800 0.5kb downstream 0.5kb downstream 1781 true Bd4: 47315161-47316941 Brachypodium distachyon
Bradi4g43800 0.5kb downstream 0.5kb downstream 500 false Bd4: 47316442-47316941 Brachypodium distachyon
Bradi4g43800 1.0kb upstream 1.0kb upstream 2281 true Bd4: 47314161-47316441 Brachypodium distachyon
Bradi4g43800 1.0kb upstream 1.0kb upstream 1000 false Bd4: 47314161-47315160 Brachypodium distachyon
Bradi4g43800 1.0kb downstream 1.0kb downstream 2281 true Bd4: 47315161-47317441 Brachypodium distachyon
Bradi4g43800 1.0kb downstream 1.0kb downstream 1000 false Bd4: 47316442-47317441 Brachypodium distachyon
Bradi4g43800 2.0kb upstream 2.0kb upstream 3281 true Bd4: 47313161-47316441 Brachypodium distachyon
Bradi4g43800 2.0kb upstream 2.0kb upstream 2000 false Bd4: 47313161-47315160 Brachypodium distachyon
Bradi4g43800 2.0kb downstream 2.0kb downstream 3281 true Bd4: 47315161-47318441 Brachypodium distachyon
Bradi4g43800 2.0kb downstream 2.0kb downstream 2000 false Bd4: 47316442-47318441 Brachypodium distachyon
Bradi4g43800 5.0kb upstream 5.0kb upstream 6281 true Bd4: 47310161-47316441 Brachypodium distachyon
Bradi4g43800 5.0kb upstream 5.0kb upstream 5000 false Bd4: 47310161-47315160 Brachypodium distachyon
Bradi4g43800 5.0kb downstream 5.0kb downstream 6281 true Bd4: 47315161-47321441 Brachypodium distachyon
Bradi4g43800 5.0kb downstream 5.0kb downstream 5000 false Bd4: 47316442-47321441 Brachypodium distachyon
Bradi4g43800 10.0kb upstream 10.0kb upstream 11281 true Bd4: 47305161-47316441 Brachypodium distachyon
Bradi4g43800 10.0kb upstream 10.0kb upstream 10000 false Bd4: 47305161-47315160 Brachypodium distachyon
Bradi4g43800 10.0kb downstream 10.0kb downstream 11281 true Bd4: 47315161-47326441 Brachypodium distachyon
Bradi4g43800 10.0kb downstream 10.0kb downstream 10000 false Bd4: 47316442-47326441 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585832 5269 Grass View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.332       High
cufflinks 0.061     Low  
cufflinks 0.032     Low  
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.02     Low  
cufflinks 0.036     Low  
cufflinks 0.039     Low  
cufflinks 0.04     Low  
cufflinks 0.012     Low Low
cufflinks 0.049     Low  
cufflinks 0.015     Low Low
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.47       High
cufflinks 0.104     Low  
cufflinks 0.16        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low  
cufflinks 0.024     Low  
cufflinks 0.026     Low  
cufflinks 0.014     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.085     Low  
cufflinks 0.041     Low  
cufflinks 0.021     Low  

0 Strain