Gene : Bradi3g12930 B. distachyon v3.1
Defline:  (1 of 1) PTHR11081//PTHR11081:SF17 - XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY // FLAP ENDONUCLEASE GEN-LIKE 2 Genomic Order:  1595
Name:  ? Bradi3g12930 Secondary Identifier:  ? PAC:32814773
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g12930 0.5kb upstream 0.5kb upstream 6125 true Bd3: 11617264-11623388 Brachypodium distachyon
Bradi3g12930 0.5kb upstream 0.5kb upstream 500 false Bd3: 11617264-11617763 Brachypodium distachyon
Bradi3g12930 0.5kb downstream 0.5kb downstream 6125 true Bd3: 11617764-11623888 Brachypodium distachyon
Bradi3g12930 0.5kb downstream 0.5kb downstream 500 false Bd3: 11623389-11623888 Brachypodium distachyon
Bradi3g12930 1.0kb upstream 1.0kb upstream 6625 true Bd3: 11616764-11623388 Brachypodium distachyon
Bradi3g12930 1.0kb upstream 1.0kb upstream 1000 false Bd3: 11616764-11617763 Brachypodium distachyon
Bradi3g12930 1.0kb downstream 1.0kb downstream 6625 true Bd3: 11617764-11624388 Brachypodium distachyon
Bradi3g12930 1.0kb downstream 1.0kb downstream 1000 false Bd3: 11623389-11624388 Brachypodium distachyon
Bradi3g12930 2.0kb upstream 2.0kb upstream 7625 true Bd3: 11615764-11623388 Brachypodium distachyon
Bradi3g12930 2.0kb upstream 2.0kb upstream 2000 false Bd3: 11615764-11617763 Brachypodium distachyon
Bradi3g12930 2.0kb downstream 2.0kb downstream 7625 true Bd3: 11617764-11625388 Brachypodium distachyon
Bradi3g12930 2.0kb downstream 2.0kb downstream 2000 false Bd3: 11623389-11625388 Brachypodium distachyon
Bradi3g12930 5.0kb upstream 5.0kb upstream 10625 true Bd3: 11612764-11623388 Brachypodium distachyon
Bradi3g12930 5.0kb upstream 5.0kb upstream 5000 false Bd3: 11612764-11617763 Brachypodium distachyon
Bradi3g12930 5.0kb downstream 5.0kb downstream 10625 true Bd3: 11617764-11628388 Brachypodium distachyon
Bradi3g12930 5.0kb downstream 5.0kb downstream 5000 false Bd3: 11623389-11628388 Brachypodium distachyon
Bradi3g12930 10.0kb upstream 10.0kb upstream 15625 true Bd3: 11607764-11623388 Brachypodium distachyon
Bradi3g12930 10.0kb upstream 10.0kb upstream 10000 false Bd3: 11607764-11617763 Brachypodium distachyon
Bradi3g12930 10.0kb downstream 10.0kb downstream 15625 true Bd3: 11617764-11633388 Brachypodium distachyon
Bradi3g12930 10.0kb downstream 10.0kb downstream 10000 false Bd3: 11623389-11633388 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573751 5269 Grass View MSA
122050954 5273 Angiosperm View MSA
121312219 5274 Embryophyte View MSA
123349413 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.668       High
cufflinks 3.832        
cufflinks 3.077        
cufflinks 4.075        
cufflinks 0.935       Low
cufflinks 4.875        
cufflinks 3.554        
cufflinks 5.355        
cufflinks 5.39        
cufflinks 3.538        
cufflinks 12.95     High High
cufflinks 4.38        
cufflinks 6.798       High
cufflinks 8.573     High High
cufflinks 5.637        
cufflinks 4.313        
cufflinks 3.463        
cufflinks 1.746        
cufflinks 1.35       Low
cufflinks 0.863       Low
cufflinks 1.212       Low
cufflinks 5.081        
cufflinks 5.143        
cufflinks 5.132        
cufflinks 4.414        
cufflinks 2.857        
cufflinks 8.968     High High
cufflinks 2.971        
cufflinks 3.414        
cufflinks 1.799        

0 Strain