Gene : Bradi3g13970 B. distachyon v3.1
Defline:  (1 of 1) PTHR34790:SF1 - PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC Genomic Order:  1726
Name:  ? Bradi3g13970 Secondary Identifier:  ? PAC:32813046
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g13970 0.5kb upstream 0.5kb upstream 1484 true Bd3: 12443706-12445189 Brachypodium distachyon
Bradi3g13970 0.5kb upstream 0.5kb upstream 500 false Bd3: 12444690-12445189 Brachypodium distachyon
Bradi3g13970 0.5kb downstream 0.5kb downstream 1484 true Bd3: 12443206-12444689 Brachypodium distachyon
Bradi3g13970 0.5kb downstream 0.5kb downstream 500 false Bd3: 12443206-12443705 Brachypodium distachyon
Bradi3g13970 1.0kb upstream 1.0kb upstream 1984 true Bd3: 12443706-12445689 Brachypodium distachyon
Bradi3g13970 1.0kb upstream 1.0kb upstream 1000 false Bd3: 12444690-12445689 Brachypodium distachyon
Bradi3g13970 1.0kb downstream 1.0kb downstream 1984 true Bd3: 12442706-12444689 Brachypodium distachyon
Bradi3g13970 1.0kb downstream 1.0kb downstream 1000 false Bd3: 12442706-12443705 Brachypodium distachyon
Bradi3g13970 2.0kb upstream 2.0kb upstream 2984 true Bd3: 12443706-12446689 Brachypodium distachyon
Bradi3g13970 2.0kb upstream 2.0kb upstream 2000 false Bd3: 12444690-12446689 Brachypodium distachyon
Bradi3g13970 2.0kb downstream 2.0kb downstream 2984 true Bd3: 12441706-12444689 Brachypodium distachyon
Bradi3g13970 2.0kb downstream 2.0kb downstream 2000 false Bd3: 12441706-12443705 Brachypodium distachyon
Bradi3g13970 5.0kb upstream 5.0kb upstream 5984 true Bd3: 12443706-12449689 Brachypodium distachyon
Bradi3g13970 5.0kb upstream 5.0kb upstream 5000 false Bd3: 12444690-12449689 Brachypodium distachyon
Bradi3g13970 5.0kb downstream 5.0kb downstream 5984 true Bd3: 12438706-12444689 Brachypodium distachyon
Bradi3g13970 5.0kb downstream 5.0kb downstream 5000 false Bd3: 12438706-12443705 Brachypodium distachyon
Bradi3g13970 10.0kb upstream 10.0kb upstream 10984 true Bd3: 12443706-12454689 Brachypodium distachyon
Bradi3g13970 10.0kb upstream 10.0kb upstream 10000 false Bd3: 12444690-12454689 Brachypodium distachyon
Bradi3g13970 10.0kb downstream 10.0kb downstream 10984 true Bd3: 12433706-12444689 Brachypodium distachyon
Bradi3g13970 10.0kb downstream 10.0kb downstream 10000 false Bd3: 12433706-12443705 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579440 5269 Grass View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 509.945     High  
cufflinks 377.857     High  
cufflinks 307.495     High  
cufflinks 552.238     High  
cufflinks 443.44     High  
cufflinks 471.755     High  
cufflinks 515.308     High  
cufflinks 404.808     High  
cufflinks 523.934     High  
cufflinks 703.351     High  
cufflinks 417.434     High  
cufflinks 381.815     High  
cufflinks 704.563     High  
cufflinks 783.166     High  
cufflinks 491.835     High  
cufflinks 391.529     High  
cufflinks 755.685     High  
cufflinks 5.522       Low
cufflinks 551.499     High  
cufflinks 177.894     High  
cufflinks 410.606     High  
cufflinks 343.259     High  
cufflinks 524.312     High  
cufflinks 634.874     High  
cufflinks 764.264     High  
cufflinks 417.142     High  
cufflinks 558.137     High  
cufflinks 540.673     High  
cufflinks 523.458     High  
cufflinks 242.698     High  

0 Strain