Gene : Bradi3g10180 B. distachyon v3.1
Defline:  (1 of 1) PTHR23309//PTHR23309:SF10 - 3-HYDROXYACYL-COA DEHYROGENASE // PEROXISOMAL FATTY ACID BETA-OXIDATION MULTIFUNCTIONAL PROTEIN AIM1 Genomic Order:  1311
Name:  ? Bradi3g10180 Secondary Identifier:  ? PAC:32814949
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Sequence Feature Displayer

Ontology Annotation Displayer

11 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ILEUDEG-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5136 Brachypodium distachyon pathologic  
Bdistachyon PWY-5137 Brachypodium distachyon pathologic  
Bdistachyon PWY-5138 Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-6435 Brachypodium distachyon pathologic  
Bdistachyon PWY-6837 Brachypodium distachyon pathologic  
Bdistachyon PWY-7036 Brachypodium distachyon pathologic  
Bdistachyon PWY-735 Brachypodium distachyon pathologic  
Bdistachyon PWY-7606 Brachypodium distachyon pathologic  
Bdistachyon VALDEG-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g10180 0.5kb upstream 0.5kb upstream 9076 true Bd3: 8326116-8335191 Brachypodium distachyon
Bradi3g10180 0.5kb upstream 0.5kb upstream 500 false Bd3: 8326116-8326615 Brachypodium distachyon
Bradi3g10180 0.5kb downstream 0.5kb downstream 9076 true Bd3: 8326616-8335691 Brachypodium distachyon
Bradi3g10180 0.5kb downstream 0.5kb downstream 500 false Bd3: 8335192-8335691 Brachypodium distachyon
Bradi3g10180 1.0kb upstream 1.0kb upstream 9576 true Bd3: 8325616-8335191 Brachypodium distachyon
Bradi3g10180 1.0kb upstream 1.0kb upstream 1000 false Bd3: 8325616-8326615 Brachypodium distachyon
Bradi3g10180 1.0kb downstream 1.0kb downstream 9576 true Bd3: 8326616-8336191 Brachypodium distachyon
Bradi3g10180 1.0kb downstream 1.0kb downstream 1000 false Bd3: 8335192-8336191 Brachypodium distachyon
Bradi3g10180 2.0kb upstream 2.0kb upstream 10576 true Bd3: 8324616-8335191 Brachypodium distachyon
Bradi3g10180 2.0kb upstream 2.0kb upstream 2000 false Bd3: 8324616-8326615 Brachypodium distachyon
Bradi3g10180 2.0kb downstream 2.0kb downstream 10576 true Bd3: 8326616-8337191 Brachypodium distachyon
Bradi3g10180 2.0kb downstream 2.0kb downstream 2000 false Bd3: 8335192-8337191 Brachypodium distachyon
Bradi3g10180 5.0kb upstream 5.0kb upstream 13576 true Bd3: 8321616-8335191 Brachypodium distachyon
Bradi3g10180 5.0kb upstream 5.0kb upstream 5000 false Bd3: 8321616-8326615 Brachypodium distachyon
Bradi3g10180 5.0kb downstream 5.0kb downstream 13576 true Bd3: 8326616-8340191 Brachypodium distachyon
Bradi3g10180 5.0kb downstream 5.0kb downstream 5000 false Bd3: 8335192-8340191 Brachypodium distachyon
Bradi3g10180 10.0kb upstream 10.0kb upstream 18576 true Bd3: 8316616-8335191 Brachypodium distachyon
Bradi3g10180 10.0kb upstream 10.0kb upstream 10000 false Bd3: 8316616-8326615 Brachypodium distachyon
Bradi3g10180 10.0kb downstream 10.0kb downstream 18576 true Bd3: 8326616-8345191 Brachypodium distachyon
Bradi3g10180 10.0kb downstream 10.0kb downstream 10000 false Bd3: 8335192-8345191 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568788 5269 Grass View MSA
122047578 5273 Angiosperm View MSA
121310763 5274 Embryophyte View MSA
123348170 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.789        
cufflinks 7.85        
cufflinks 8.018        
cufflinks 6.945        
cufflinks 7.297        
cufflinks 7.19        
cufflinks 6.759        
cufflinks 6.555        
cufflinks 6.946        
cufflinks 5.216       Low
cufflinks 6.922        
cufflinks 8.693        
cufflinks 5.972        
cufflinks 4.747       Low
cufflinks 7.735        
cufflinks 7.544        
cufflinks 6.781        
cufflinks 15.406     High High
cufflinks 10.439       High
cufflinks 11.23     High High
cufflinks 7.61        
cufflinks 7.464        
cufflinks 6.821        
cufflinks 7.122        
cufflinks 6.064        
cufflinks 7.233        
cufflinks 6.1        
cufflinks 6.897        
cufflinks 6.857        
cufflinks 10.84       High

0 Strain