Gene : Bradi3g10650 B. distachyon v3.1
Defline:  (1 of 2) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  1381
Name:  ? Bradi3g10650 Secondary Identifier:  ? PAC:32812302
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g10650 0.5kb upstream 0.5kb upstream 8580 true Bd3: 8852504-8861083 Brachypodium distachyon
Bradi3g10650 0.5kb upstream 0.5kb upstream 500 false Bd3: 8860584-8861083 Brachypodium distachyon
Bradi3g10650 0.5kb downstream 0.5kb downstream 8580 true Bd3: 8852004-8860583 Brachypodium distachyon
Bradi3g10650 0.5kb downstream 0.5kb downstream 500 false Bd3: 8852004-8852503 Brachypodium distachyon
Bradi3g10650 1.0kb upstream 1.0kb upstream 9080 true Bd3: 8852504-8861583 Brachypodium distachyon
Bradi3g10650 1.0kb upstream 1.0kb upstream 1000 false Bd3: 8860584-8861583 Brachypodium distachyon
Bradi3g10650 1.0kb downstream 1.0kb downstream 9080 true Bd3: 8851504-8860583 Brachypodium distachyon
Bradi3g10650 1.0kb downstream 1.0kb downstream 1000 false Bd3: 8851504-8852503 Brachypodium distachyon
Bradi3g10650 2.0kb upstream 2.0kb upstream 10080 true Bd3: 8852504-8862583 Brachypodium distachyon
Bradi3g10650 2.0kb upstream 2.0kb upstream 2000 false Bd3: 8860584-8862583 Brachypodium distachyon
Bradi3g10650 2.0kb downstream 2.0kb downstream 10080 true Bd3: 8850504-8860583 Brachypodium distachyon
Bradi3g10650 2.0kb downstream 2.0kb downstream 2000 false Bd3: 8850504-8852503 Brachypodium distachyon
Bradi3g10650 5.0kb upstream 5.0kb upstream 13080 true Bd3: 8852504-8865583 Brachypodium distachyon
Bradi3g10650 5.0kb upstream 5.0kb upstream 5000 false Bd3: 8860584-8865583 Brachypodium distachyon
Bradi3g10650 5.0kb downstream 5.0kb downstream 13080 true Bd3: 8847504-8860583 Brachypodium distachyon
Bradi3g10650 5.0kb downstream 5.0kb downstream 5000 false Bd3: 8847504-8852503 Brachypodium distachyon
Bradi3g10650 10.0kb upstream 10.0kb upstream 18080 true Bd3: 8852504-8870583 Brachypodium distachyon
Bradi3g10650 10.0kb upstream 10.0kb upstream 10000 false Bd3: 8860584-8870583 Brachypodium distachyon
Bradi3g10650 10.0kb downstream 10.0kb downstream 18080 true Bd3: 8842504-8860583 Brachypodium distachyon
Bradi3g10650 10.0kb downstream 10.0kb downstream 10000 false Bd3: 8842504-8852503 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586417 5269 Grass View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.879     High  
cufflinks 7.02       Low
cufflinks 9.579        
cufflinks 7.331        
cufflinks 8.973     High  
cufflinks 7.107       Low
cufflinks 6.707       Low
cufflinks 8.766        
cufflinks 7.78        
cufflinks 13.192     High High
cufflinks 9.396     High  
cufflinks 8.381        
cufflinks 8.425     High  
cufflinks 9.419     High  
cufflinks 10.112     High  
cufflinks 7.547        
cufflinks 9.478        
cufflinks 12.244     High High
cufflinks 9.9        
cufflinks 4.852       Low
cufflinks 17.352     High High
cufflinks 11.218     High  
cufflinks 8.99        
cufflinks 9.233        
cufflinks 8.267        
cufflinks 11.242     High  
cufflinks 10.219     High  
cufflinks 11.795     High High
cufflinks 11.198     High  
cufflinks 13.581     High High

0 Strain