Gene : Bradi4g42240 B. distachyon v3.1
Defline:  (1 of 10) PF11250 - Fantastic Four meristem regulator (FAF) Genomic Order:  5438
Name:  ? Bradi4g42240 Secondary Identifier:  ? PAC:32787264
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g42240 0.5kb upstream 0.5kb upstream 1809 true Bd4: 46250991-46252799 Brachypodium distachyon
Bradi4g42240 0.5kb upstream 0.5kb upstream 500 false Bd4: 46250991-46251490 Brachypodium distachyon
Bradi4g42240 0.5kb downstream 0.5kb downstream 1809 true Bd4: 46251491-46253299 Brachypodium distachyon
Bradi4g42240 0.5kb downstream 0.5kb downstream 500 false Bd4: 46252800-46253299 Brachypodium distachyon
Bradi4g42240 1.0kb upstream 1.0kb upstream 2309 true Bd4: 46250491-46252799 Brachypodium distachyon
Bradi4g42240 1.0kb upstream 1.0kb upstream 1000 false Bd4: 46250491-46251490 Brachypodium distachyon
Bradi4g42240 1.0kb downstream 1.0kb downstream 2309 true Bd4: 46251491-46253799 Brachypodium distachyon
Bradi4g42240 1.0kb downstream 1.0kb downstream 1000 false Bd4: 46252800-46253799 Brachypodium distachyon
Bradi4g42240 2.0kb upstream 2.0kb upstream 3309 true Bd4: 46249491-46252799 Brachypodium distachyon
Bradi4g42240 2.0kb upstream 2.0kb upstream 2000 false Bd4: 46249491-46251490 Brachypodium distachyon
Bradi4g42240 2.0kb downstream 2.0kb downstream 3309 true Bd4: 46251491-46254799 Brachypodium distachyon
Bradi4g42240 2.0kb downstream 2.0kb downstream 2000 false Bd4: 46252800-46254799 Brachypodium distachyon
Bradi4g42240 5.0kb upstream 5.0kb upstream 6309 true Bd4: 46246491-46252799 Brachypodium distachyon
Bradi4g42240 5.0kb upstream 5.0kb upstream 5000 false Bd4: 46246491-46251490 Brachypodium distachyon
Bradi4g42240 5.0kb downstream 5.0kb downstream 6309 true Bd4: 46251491-46257799 Brachypodium distachyon
Bradi4g42240 5.0kb downstream 5.0kb downstream 5000 false Bd4: 46252800-46257799 Brachypodium distachyon
Bradi4g42240 10.0kb upstream 10.0kb upstream 11309 true Bd4: 46241491-46252799 Brachypodium distachyon
Bradi4g42240 10.0kb upstream 10.0kb upstream 10000 false Bd4: 46241491-46251490 Brachypodium distachyon
Bradi4g42240 10.0kb downstream 10.0kb downstream 11309 true Bd4: 46251491-46262799 Brachypodium distachyon
Bradi4g42240 10.0kb downstream 10.0kb downstream 10000 false Bd4: 46252800-46262799 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584437 5269 Grass View MSA
122048900 5273 Angiosperm View MSA
121311160 5274 Embryophyte View MSA
123348494 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.377     High  
cufflinks 2.541        
cufflinks 1.167       Low
cufflinks 4.494        
cufflinks 4.588        
cufflinks 9.74     High  
cufflinks 3.662        
cufflinks 13.727     High  
cufflinks 20.955     High  
cufflinks 22.816     High  
cufflinks 29.992     High High
cufflinks 7.406        
cufflinks 17.914     High  
cufflinks 34.007     High High
cufflinks 21.575     High  
cufflinks 7.432        
cufflinks 17.994     High  
cufflinks 0.658       Low
cufflinks 0.102     Low Low
cufflinks 26.192     High  
cufflinks 27.538     High  
cufflinks 8.113        
cufflinks 13.444     High  
cufflinks 16.305     High  
cufflinks 16.331     High  
cufflinks 0.998       Low
cufflinks 60.136     High High
cufflinks 3.626        
cufflinks 7.442        
cufflinks 1.204       Low

0 Strain