Gene : Bradi3g11220 B. distachyon v3.1
Defline:  (1 of 1) PTHR19305//PTHR19305:SF11 - SYNAPTOSOMAL ASSOCIATED PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1472
Name:  ? Bradi3g11220 Secondary Identifier:  ? PAC:32817582
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g11220 0.5kb upstream 0.5kb upstream 3327 true Bd3: 9681245-9684571 Brachypodium distachyon
Bradi3g11220 0.5kb upstream 0.5kb upstream 500 false Bd3: 9681245-9681744 Brachypodium distachyon
Bradi3g11220 0.5kb downstream 0.5kb downstream 3327 true Bd3: 9681745-9685071 Brachypodium distachyon
Bradi3g11220 0.5kb downstream 0.5kb downstream 500 false Bd3: 9684572-9685071 Brachypodium distachyon
Bradi3g11220 1.0kb upstream 1.0kb upstream 3827 true Bd3: 9680745-9684571 Brachypodium distachyon
Bradi3g11220 1.0kb upstream 1.0kb upstream 1000 false Bd3: 9680745-9681744 Brachypodium distachyon
Bradi3g11220 1.0kb downstream 1.0kb downstream 3827 true Bd3: 9681745-9685571 Brachypodium distachyon
Bradi3g11220 1.0kb downstream 1.0kb downstream 1000 false Bd3: 9684572-9685571 Brachypodium distachyon
Bradi3g11220 2.0kb upstream 2.0kb upstream 4827 true Bd3: 9679745-9684571 Brachypodium distachyon
Bradi3g11220 2.0kb upstream 2.0kb upstream 2000 false Bd3: 9679745-9681744 Brachypodium distachyon
Bradi3g11220 2.0kb downstream 2.0kb downstream 4827 true Bd3: 9681745-9686571 Brachypodium distachyon
Bradi3g11220 2.0kb downstream 2.0kb downstream 2000 false Bd3: 9684572-9686571 Brachypodium distachyon
Bradi3g11220 5.0kb upstream 5.0kb upstream 7827 true Bd3: 9676745-9684571 Brachypodium distachyon
Bradi3g11220 5.0kb upstream 5.0kb upstream 5000 false Bd3: 9676745-9681744 Brachypodium distachyon
Bradi3g11220 5.0kb downstream 5.0kb downstream 7827 true Bd3: 9681745-9689571 Brachypodium distachyon
Bradi3g11220 5.0kb downstream 5.0kb downstream 5000 false Bd3: 9684572-9689571 Brachypodium distachyon
Bradi3g11220 10.0kb upstream 10.0kb upstream 12827 true Bd3: 9671745-9684571 Brachypodium distachyon
Bradi3g11220 10.0kb upstream 10.0kb upstream 10000 false Bd3: 9671745-9681744 Brachypodium distachyon
Bradi3g11220 10.0kb downstream 10.0kb downstream 12827 true Bd3: 9681745-9694571 Brachypodium distachyon
Bradi3g11220 10.0kb downstream 10.0kb downstream 10000 false Bd3: 9684572-9694571 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579554 5269 Grass View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.958     High High
cufflinks 2.086       Low
cufflinks 3.363        
cufflinks 2.373       Low
cufflinks 13.156     High High
cufflinks 2.533       Low
cufflinks 2.299       Low
cufflinks 4.765        
cufflinks 2.73        
cufflinks 5.608        
cufflinks 13.292     High High
cufflinks 10.098     High  
cufflinks 4.357        
cufflinks 5.646        
cufflinks 23.382     High High
cufflinks 3.296        
cufflinks 4.327        
cufflinks 6.182        
cufflinks 20.521     High High
cufflinks 17.171     High High
cufflinks 3.279        
cufflinks 4.177        
cufflinks 2.704        
cufflinks 2.369       Low
cufflinks 2.411       Low
cufflinks 3.782        
cufflinks 4.512        
cufflinks 4.755        
cufflinks 4.387        
cufflinks 4.098        

0 Strain