Gene : Bradi3g11327 B. distachyon v3.1
Defline:  (1 of 1) PF08167 - rRNA processing/ribosome biogenesis (RIX1) Genomic Order:  1483
Name:  ? Bradi3g11327 Secondary Identifier:  ? PAC:32816004
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g11327 0.5kb upstream 0.5kb upstream 11693 true Bd3: 9780560-9792252 Brachypodium distachyon
Bradi3g11327 0.5kb upstream 0.5kb upstream 500 false Bd3: 9780560-9781059 Brachypodium distachyon
Bradi3g11327 0.5kb downstream 0.5kb downstream 11693 true Bd3: 9781060-9792752 Brachypodium distachyon
Bradi3g11327 0.5kb downstream 0.5kb downstream 500 false Bd3: 9792253-9792752 Brachypodium distachyon
Bradi3g11327 1.0kb upstream 1.0kb upstream 12193 true Bd3: 9780060-9792252 Brachypodium distachyon
Bradi3g11327 1.0kb upstream 1.0kb upstream 1000 false Bd3: 9780060-9781059 Brachypodium distachyon
Bradi3g11327 1.0kb downstream 1.0kb downstream 12193 true Bd3: 9781060-9793252 Brachypodium distachyon
Bradi3g11327 1.0kb downstream 1.0kb downstream 1000 false Bd3: 9792253-9793252 Brachypodium distachyon
Bradi3g11327 2.0kb upstream 2.0kb upstream 13193 true Bd3: 9779060-9792252 Brachypodium distachyon
Bradi3g11327 2.0kb upstream 2.0kb upstream 2000 false Bd3: 9779060-9781059 Brachypodium distachyon
Bradi3g11327 2.0kb downstream 2.0kb downstream 13193 true Bd3: 9781060-9794252 Brachypodium distachyon
Bradi3g11327 2.0kb downstream 2.0kb downstream 2000 false Bd3: 9792253-9794252 Brachypodium distachyon
Bradi3g11327 5.0kb upstream 5.0kb upstream 16193 true Bd3: 9776060-9792252 Brachypodium distachyon
Bradi3g11327 5.0kb upstream 5.0kb upstream 5000 false Bd3: 9776060-9781059 Brachypodium distachyon
Bradi3g11327 5.0kb downstream 5.0kb downstream 16193 true Bd3: 9781060-9797252 Brachypodium distachyon
Bradi3g11327 5.0kb downstream 5.0kb downstream 5000 false Bd3: 9792253-9797252 Brachypodium distachyon
Bradi3g11327 10.0kb upstream 10.0kb upstream 21193 true Bd3: 9771060-9792252 Brachypodium distachyon
Bradi3g11327 10.0kb upstream 10.0kb upstream 10000 false Bd3: 9771060-9781059 Brachypodium distachyon
Bradi3g11327 10.0kb downstream 10.0kb downstream 21193 true Bd3: 9781060-9802252 Brachypodium distachyon
Bradi3g11327 10.0kb downstream 10.0kb downstream 10000 false Bd3: 9792253-9802252 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572925 5269 Grass View MSA
122050850 5273 Angiosperm View MSA
121349026 5274 Embryophyte View MSA
123425273 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.829        
cufflinks 1.619       High
cufflinks 1.334        
cufflinks 1.137        
cufflinks 0.442        
cufflinks 1.349        
cufflinks 1.375        
cufflinks 1.129        
cufflinks 1.23        
cufflinks 0.648        
cufflinks 0.683        
cufflinks 1.075        
cufflinks 0.479        
cufflinks 0.413       Low
cufflinks 0.359       Low
cufflinks 1.321        
cufflinks 0.923        
cufflinks 2.858       High
cufflinks 0.791        
cufflinks 0.189       Low
cufflinks 1.058        
cufflinks 1.095        
cufflinks 0.97        
cufflinks 0.939        
cufflinks 1.173        
cufflinks 0.975        
cufflinks 0.513        
cufflinks 0.863        
cufflinks 0.922        
cufflinks 1.318        

0 Strain