Gene : Bradi3g11353 B. distachyon v3.1
Defline:  (1 of 19) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  1485
Name:  ? Bradi3g11353 Secondary Identifier:  ? PAC:32818354
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g11353 0.5kb upstream 0.5kb upstream 1870 true Bd3: 9818886-9820755 Brachypodium distachyon
Bradi3g11353 0.5kb upstream 0.5kb upstream 500 false Bd3: 9820256-9820755 Brachypodium distachyon
Bradi3g11353 0.5kb downstream 0.5kb downstream 1870 true Bd3: 9818386-9820255 Brachypodium distachyon
Bradi3g11353 0.5kb downstream 0.5kb downstream 500 false Bd3: 9818386-9818885 Brachypodium distachyon
Bradi3g11353 1.0kb upstream 1.0kb upstream 2370 true Bd3: 9818886-9821255 Brachypodium distachyon
Bradi3g11353 1.0kb upstream 1.0kb upstream 1000 false Bd3: 9820256-9821255 Brachypodium distachyon
Bradi3g11353 1.0kb downstream 1.0kb downstream 2370 true Bd3: 9817886-9820255 Brachypodium distachyon
Bradi3g11353 1.0kb downstream 1.0kb downstream 1000 false Bd3: 9817886-9818885 Brachypodium distachyon
Bradi3g11353 2.0kb upstream 2.0kb upstream 3370 true Bd3: 9818886-9822255 Brachypodium distachyon
Bradi3g11353 2.0kb upstream 2.0kb upstream 2000 false Bd3: 9820256-9822255 Brachypodium distachyon
Bradi3g11353 2.0kb downstream 2.0kb downstream 3370 true Bd3: 9816886-9820255 Brachypodium distachyon
Bradi3g11353 2.0kb downstream 2.0kb downstream 2000 false Bd3: 9816886-9818885 Brachypodium distachyon
Bradi3g11353 5.0kb upstream 5.0kb upstream 6370 true Bd3: 9818886-9825255 Brachypodium distachyon
Bradi3g11353 5.0kb upstream 5.0kb upstream 5000 false Bd3: 9820256-9825255 Brachypodium distachyon
Bradi3g11353 5.0kb downstream 5.0kb downstream 6370 true Bd3: 9813886-9820255 Brachypodium distachyon
Bradi3g11353 5.0kb downstream 5.0kb downstream 5000 false Bd3: 9813886-9818885 Brachypodium distachyon
Bradi3g11353 10.0kb upstream 10.0kb upstream 11370 true Bd3: 9818886-9830255 Brachypodium distachyon
Bradi3g11353 10.0kb upstream 10.0kb upstream 10000 false Bd3: 9820256-9830255 Brachypodium distachyon
Bradi3g11353 10.0kb downstream 10.0kb downstream 11370 true Bd3: 9808886-9820255 Brachypodium distachyon
Bradi3g11353 10.0kb downstream 10.0kb downstream 10000 false Bd3: 9808886-9818885 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995298 5273 Angiosperm View MSA
124587794 5269 Grass View MSA
121265492 5274 Embryophyte View MSA
123303874 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101        
cufflinks 0.192        
cufflinks 0.049     Low Low
cufflinks 0.25       High
cufflinks 0.042     Low Low
cufflinks 0.135        
cufflinks 0.136        
cufflinks 0.106        
cufflinks 0.203        
cufflinks 0.022     Low Low
cufflinks 0.285       High
cufflinks 0.109        
cufflinks 0.155        
cufflinks 0.167        
cufflinks 0.135        
cufflinks 0.172        
cufflinks 0.031     Low Low
cufflinks 0.23       High
cufflinks 0.048     Low Low
cufflinks 0.052     Low Low
cufflinks 0.063     Low  
cufflinks 0.109     Low  
cufflinks 0.081     Low  
cufflinks 0.213        
cufflinks 0.25       High
cufflinks 0.168        
cufflinks 0.054     Low  
cufflinks 0.084     Low  
cufflinks 0.269       High
cufflinks 0.182        

0 Strain