Gene : Bradi3g12460 B. distachyon v3.1
Defline:  (1 of 1) 1.1.1.82 - Malate dehydrogenase (NADP(+)) / NADP-linked malate dehydrogenase Genomic Order:  1536
Name:  ? Bradi3g12460 Secondary Identifier:  ? PAC:32816839
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-241 Brachypodium distachyon pathologic  
Bdistachyon PWY-7117 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g12460 0.5kb upstream 0.5kb upstream 5581 true Bd3: 11174830-11180410 Brachypodium distachyon
Bradi3g12460 0.5kb upstream 0.5kb upstream 500 false Bd3: 11174830-11175329 Brachypodium distachyon
Bradi3g12460 0.5kb downstream 0.5kb downstream 5581 true Bd3: 11175330-11180910 Brachypodium distachyon
Bradi3g12460 0.5kb downstream 0.5kb downstream 500 false Bd3: 11180411-11180910 Brachypodium distachyon
Bradi3g12460 1.0kb upstream 1.0kb upstream 6081 true Bd3: 11174330-11180410 Brachypodium distachyon
Bradi3g12460 1.0kb upstream 1.0kb upstream 1000 false Bd3: 11174330-11175329 Brachypodium distachyon
Bradi3g12460 1.0kb downstream 1.0kb downstream 6081 true Bd3: 11175330-11181410 Brachypodium distachyon
Bradi3g12460 1.0kb downstream 1.0kb downstream 1000 false Bd3: 11180411-11181410 Brachypodium distachyon
Bradi3g12460 2.0kb upstream 2.0kb upstream 7081 true Bd3: 11173330-11180410 Brachypodium distachyon
Bradi3g12460 2.0kb upstream 2.0kb upstream 2000 false Bd3: 11173330-11175329 Brachypodium distachyon
Bradi3g12460 2.0kb downstream 2.0kb downstream 7081 true Bd3: 11175330-11182410 Brachypodium distachyon
Bradi3g12460 2.0kb downstream 2.0kb downstream 2000 false Bd3: 11180411-11182410 Brachypodium distachyon
Bradi3g12460 5.0kb upstream 5.0kb upstream 10081 true Bd3: 11170330-11180410 Brachypodium distachyon
Bradi3g12460 5.0kb upstream 5.0kb upstream 5000 false Bd3: 11170330-11175329 Brachypodium distachyon
Bradi3g12460 5.0kb downstream 5.0kb downstream 10081 true Bd3: 11175330-11185410 Brachypodium distachyon
Bradi3g12460 5.0kb downstream 5.0kb downstream 5000 false Bd3: 11180411-11185410 Brachypodium distachyon
Bradi3g12460 10.0kb upstream 10.0kb upstream 15081 true Bd3: 11165330-11180410 Brachypodium distachyon
Bradi3g12460 10.0kb upstream 10.0kb upstream 10000 false Bd3: 11165330-11175329 Brachypodium distachyon
Bradi3g12460 10.0kb downstream 10.0kb downstream 15081 true Bd3: 11175330-11190410 Brachypodium distachyon
Bradi3g12460 10.0kb downstream 10.0kb downstream 10000 false Bd3: 11180411-11190410 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573172 5269 Grass View MSA
122041880 5273 Angiosperm View MSA
121345837 5274 Embryophyte View MSA
123423785 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.943     High  
cufflinks 33.616     High  
cufflinks 41.714     High  
cufflinks 43.428     High  
cufflinks 30.276     High  
cufflinks 31.939     High  
cufflinks 30.737     High  
cufflinks 30.109     High  
cufflinks 34.815     High  
cufflinks 35.911     High  
cufflinks 50.405     High  
cufflinks 31.821     High  
cufflinks 46.313     High  
cufflinks 49.775     High  
cufflinks 38.23     High  
cufflinks 30.9     High  
cufflinks 31.714     High  
cufflinks 1.421       Low
cufflinks 8.831       Low
cufflinks 13.595     High  
cufflinks 21.942     High  
cufflinks 35.112     High  
cufflinks 31.847     High  
cufflinks 36.925     High  
cufflinks 35.765     High  
cufflinks 45.468     High  
cufflinks 52.948     High  
cufflinks 41.415     High  
cufflinks 39.167     High  
cufflinks 22.208     High  

0 Strain