Gene : Bradi3g12690 B. distachyon v3.1
Defline:  (1 of 1) PTHR31332:SF0 - 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC Genomic Order:  1563
Name:  ? Bradi3g12690 Secondary Identifier:  ? PAC:32813705
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5068 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g12690 0.5kb upstream 0.5kb upstream 5047 true Bd3: 11409077-11414123 Brachypodium distachyon
Bradi3g12690 0.5kb upstream 0.5kb upstream 500 false Bd3: 11413624-11414123 Brachypodium distachyon
Bradi3g12690 0.5kb downstream 0.5kb downstream 5047 true Bd3: 11408577-11413623 Brachypodium distachyon
Bradi3g12690 0.5kb downstream 0.5kb downstream 500 false Bd3: 11408577-11409076 Brachypodium distachyon
Bradi3g12690 1.0kb upstream 1.0kb upstream 5547 true Bd3: 11409077-11414623 Brachypodium distachyon
Bradi3g12690 1.0kb upstream 1.0kb upstream 1000 false Bd3: 11413624-11414623 Brachypodium distachyon
Bradi3g12690 1.0kb downstream 1.0kb downstream 5547 true Bd3: 11408077-11413623 Brachypodium distachyon
Bradi3g12690 1.0kb downstream 1.0kb downstream 1000 false Bd3: 11408077-11409076 Brachypodium distachyon
Bradi3g12690 2.0kb upstream 2.0kb upstream 6547 true Bd3: 11409077-11415623 Brachypodium distachyon
Bradi3g12690 2.0kb upstream 2.0kb upstream 2000 false Bd3: 11413624-11415623 Brachypodium distachyon
Bradi3g12690 2.0kb downstream 2.0kb downstream 6547 true Bd3: 11407077-11413623 Brachypodium distachyon
Bradi3g12690 2.0kb downstream 2.0kb downstream 2000 false Bd3: 11407077-11409076 Brachypodium distachyon
Bradi3g12690 5.0kb upstream 5.0kb upstream 9547 true Bd3: 11409077-11418623 Brachypodium distachyon
Bradi3g12690 5.0kb upstream 5.0kb upstream 5000 false Bd3: 11413624-11418623 Brachypodium distachyon
Bradi3g12690 5.0kb downstream 5.0kb downstream 9547 true Bd3: 11404077-11413623 Brachypodium distachyon
Bradi3g12690 5.0kb downstream 5.0kb downstream 5000 false Bd3: 11404077-11409076 Brachypodium distachyon
Bradi3g12690 10.0kb upstream 10.0kb upstream 14547 true Bd3: 11409077-11423623 Brachypodium distachyon
Bradi3g12690 10.0kb upstream 10.0kb upstream 10000 false Bd3: 11413624-11423623 Brachypodium distachyon
Bradi3g12690 10.0kb downstream 10.0kb downstream 14547 true Bd3: 11399077-11413623 Brachypodium distachyon
Bradi3g12690 10.0kb downstream 10.0kb downstream 10000 false Bd3: 11399077-11409076 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582983 5269 Grass View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.364        
cufflinks 10.914     High  
cufflinks 13.325     High  
cufflinks 12.706     High  
cufflinks 6.81        
cufflinks 9.313        
cufflinks 9.395        
cufflinks 9.147        
cufflinks 9.374        
cufflinks 12.08     High  
cufflinks 14.867     High High
cufflinks 9.17     High  
cufflinks 8.36     High  
cufflinks 10.939     High  
cufflinks 8.707     High  
cufflinks 9.744     High  
cufflinks 7.691        
cufflinks 1.261       Low
cufflinks 5.8        
cufflinks 3.469       Low
cufflinks 4.79        
cufflinks 12.313     High  
cufflinks 9.12        
cufflinks 8.843        
cufflinks 10.207     High  
cufflinks 15.173     High High
cufflinks 8.723        
cufflinks 13.692     High  
cufflinks 14.199     High  
cufflinks 6.661        

0 Strain