Gene : Bradi3g12720 B. distachyon v3.1
Defline:  (1 of 1) PTHR10168//PTHR10168:SF14 - GLUTAREDOXIN // GLUTAREDOXIN-C5, CHLOROPLASTIC-RELATED Genomic Order:  1568
Name:  ? Bradi3g12720 Secondary Identifier:  ? PAC:32818772
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon THIOREDOX-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g12720 0.5kb upstream 0.5kb upstream 3090 true Bd3: 11439357-11442446 Brachypodium distachyon
Bradi3g12720 0.5kb upstream 0.5kb upstream 500 false Bd3: 11439357-11439856 Brachypodium distachyon
Bradi3g12720 0.5kb downstream 0.5kb downstream 3090 true Bd3: 11439857-11442946 Brachypodium distachyon
Bradi3g12720 0.5kb downstream 0.5kb downstream 500 false Bd3: 11442447-11442946 Brachypodium distachyon
Bradi3g12720 1.0kb upstream 1.0kb upstream 3590 true Bd3: 11438857-11442446 Brachypodium distachyon
Bradi3g12720 1.0kb upstream 1.0kb upstream 1000 false Bd3: 11438857-11439856 Brachypodium distachyon
Bradi3g12720 1.0kb downstream 1.0kb downstream 3590 true Bd3: 11439857-11443446 Brachypodium distachyon
Bradi3g12720 1.0kb downstream 1.0kb downstream 1000 false Bd3: 11442447-11443446 Brachypodium distachyon
Bradi3g12720 2.0kb upstream 2.0kb upstream 4590 true Bd3: 11437857-11442446 Brachypodium distachyon
Bradi3g12720 2.0kb upstream 2.0kb upstream 2000 false Bd3: 11437857-11439856 Brachypodium distachyon
Bradi3g12720 2.0kb downstream 2.0kb downstream 4590 true Bd3: 11439857-11444446 Brachypodium distachyon
Bradi3g12720 2.0kb downstream 2.0kb downstream 2000 false Bd3: 11442447-11444446 Brachypodium distachyon
Bradi3g12720 5.0kb upstream 5.0kb upstream 7590 true Bd3: 11434857-11442446 Brachypodium distachyon
Bradi3g12720 5.0kb upstream 5.0kb upstream 5000 false Bd3: 11434857-11439856 Brachypodium distachyon
Bradi3g12720 5.0kb downstream 5.0kb downstream 7590 true Bd3: 11439857-11447446 Brachypodium distachyon
Bradi3g12720 5.0kb downstream 5.0kb downstream 5000 false Bd3: 11442447-11447446 Brachypodium distachyon
Bradi3g12720 10.0kb upstream 10.0kb upstream 12590 true Bd3: 11429857-11442446 Brachypodium distachyon
Bradi3g12720 10.0kb upstream 10.0kb upstream 10000 false Bd3: 11429857-11439856 Brachypodium distachyon
Bradi3g12720 10.0kb downstream 10.0kb downstream 12590 true Bd3: 11439857-11452446 Brachypodium distachyon
Bradi3g12720 10.0kb downstream 10.0kb downstream 10000 false Bd3: 11442447-11452446 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026565 5273 Angiosperm View MSA
124576757 5269 Grass View MSA
121350843 5274 Embryophyte View MSA
123428660 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.461     High  
cufflinks 19.317     High  
cufflinks 17.159     High  
cufflinks 22.629     High  
cufflinks 21.774     High  
cufflinks 19.326     High  
cufflinks 20.057     High  
cufflinks 21.14     High  
cufflinks 18.824     High  
cufflinks 34.734     High High
cufflinks 13.837     High Low
cufflinks 15.127     High  
cufflinks 17.775     High  
cufflinks 17.923     High  
cufflinks 18.483     High  
cufflinks 21.7     High  
cufflinks 31.896     High High
cufflinks 7.335       Low
cufflinks 35.076     High High
cufflinks 17.906     High  
cufflinks 23.051     High  
cufflinks 18.475     High  
cufflinks 21.584     High  
cufflinks 21.753     High  
cufflinks 22.639     High  
cufflinks 21.682     High  
cufflinks 15.98     High  
cufflinks 23.656     High  
cufflinks 23.583     High  
cufflinks 17.996     High  

0 Strain