Gene : Bradi3g17560 B. distachyon v3.1
Defline:  (1 of 2) K12589 - exosome complex component RRP42 (RRP42, EXOSC7) Genomic Order:  2219
Name:  ? Bradi3g17560 Secondary Identifier:  ? PAC:32817623
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g17560 0.5kb upstream 0.5kb upstream 5137 true Bd3: 15892252-15897388 Brachypodium distachyon
Bradi3g17560 0.5kb upstream 0.5kb upstream 500 false Bd3: 15896889-15897388 Brachypodium distachyon
Bradi3g17560 0.5kb downstream 0.5kb downstream 5137 true Bd3: 15891752-15896888 Brachypodium distachyon
Bradi3g17560 0.5kb downstream 0.5kb downstream 500 false Bd3: 15891752-15892251 Brachypodium distachyon
Bradi3g17560 1.0kb upstream 1.0kb upstream 5637 true Bd3: 15892252-15897888 Brachypodium distachyon
Bradi3g17560 1.0kb upstream 1.0kb upstream 1000 false Bd3: 15896889-15897888 Brachypodium distachyon
Bradi3g17560 1.0kb downstream 1.0kb downstream 5637 true Bd3: 15891252-15896888 Brachypodium distachyon
Bradi3g17560 1.0kb downstream 1.0kb downstream 1000 false Bd3: 15891252-15892251 Brachypodium distachyon
Bradi3g17560 2.0kb upstream 2.0kb upstream 6637 true Bd3: 15892252-15898888 Brachypodium distachyon
Bradi3g17560 2.0kb upstream 2.0kb upstream 2000 false Bd3: 15896889-15898888 Brachypodium distachyon
Bradi3g17560 2.0kb downstream 2.0kb downstream 6637 true Bd3: 15890252-15896888 Brachypodium distachyon
Bradi3g17560 2.0kb downstream 2.0kb downstream 2000 false Bd3: 15890252-15892251 Brachypodium distachyon
Bradi3g17560 5.0kb upstream 5.0kb upstream 9637 true Bd3: 15892252-15901888 Brachypodium distachyon
Bradi3g17560 5.0kb upstream 5.0kb upstream 5000 false Bd3: 15896889-15901888 Brachypodium distachyon
Bradi3g17560 5.0kb downstream 5.0kb downstream 9637 true Bd3: 15887252-15896888 Brachypodium distachyon
Bradi3g17560 5.0kb downstream 5.0kb downstream 5000 false Bd3: 15887252-15892251 Brachypodium distachyon
Bradi3g17560 10.0kb upstream 10.0kb upstream 14637 true Bd3: 15892252-15906888 Brachypodium distachyon
Bradi3g17560 10.0kb upstream 10.0kb upstream 10000 false Bd3: 15896889-15906888 Brachypodium distachyon
Bradi3g17560 10.0kb downstream 10.0kb downstream 14637 true Bd3: 15882252-15896888 Brachypodium distachyon
Bradi3g17560 10.0kb downstream 10.0kb downstream 10000 false Bd3: 15882252-15892251 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030443 5273 Angiosperm View MSA
124472866 5269 Grass Singleton cluster - no MSA
121299617 5274 Embryophyte View MSA
123428075 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.019       High
cufflinks 0.864        
cufflinks 0.566        
cufflinks 0.782        
cufflinks 0.474        
cufflinks 0.657        
cufflinks 0.711        
cufflinks 0.653        
cufflinks 0.644        
cufflinks 0.404        
cufflinks 0.396        
cufflinks 0.426        
cufflinks 0.232       Low
cufflinks 0.237       Low
cufflinks 0.572        
cufflinks 0.713        
cufflinks 0.564        
cufflinks 1.212       High
cufflinks 0.359        
cufflinks 0.12     Low Low
cufflinks 0.88        
cufflinks 0.422        
cufflinks 0.541        
cufflinks 0.72        
cufflinks 0.904        
cufflinks 0.51        
cufflinks 0.27       Low
cufflinks 0.385        
cufflinks 0.369        
cufflinks 0.911        

0 Strain