Gene : Bradi4g39600 B. distachyon v3.1
Defline:  (1 of 2) PTHR23359//PTHR23359:SF99 - NUCLEOTIDE KINASE // SUBFAMILY NOT NAMED Genomic Order:  5100
Name:  ? Bradi4g39600 Secondary Identifier:  ? PAC:32785285
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7219 Brachypodium distachyon pathologic  
Bdistachyon PWY-7229 Brachypodium distachyon pathologic  
Bdistachyon PWY-841 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g39600 0.5kb upstream 0.5kb upstream 4300 true Bd4: 44180700-44184999 Brachypodium distachyon
Bradi4g39600 0.5kb upstream 0.5kb upstream 500 false Bd4: 44184500-44184999 Brachypodium distachyon
Bradi4g39600 0.5kb downstream 0.5kb downstream 4300 true Bd4: 44180200-44184499 Brachypodium distachyon
Bradi4g39600 0.5kb downstream 0.5kb downstream 500 false Bd4: 44180200-44180699 Brachypodium distachyon
Bradi4g39600 1.0kb upstream 1.0kb upstream 4800 true Bd4: 44180700-44185499 Brachypodium distachyon
Bradi4g39600 1.0kb upstream 1.0kb upstream 1000 false Bd4: 44184500-44185499 Brachypodium distachyon
Bradi4g39600 1.0kb downstream 1.0kb downstream 4800 true Bd4: 44179700-44184499 Brachypodium distachyon
Bradi4g39600 1.0kb downstream 1.0kb downstream 1000 false Bd4: 44179700-44180699 Brachypodium distachyon
Bradi4g39600 2.0kb upstream 2.0kb upstream 5800 true Bd4: 44180700-44186499 Brachypodium distachyon
Bradi4g39600 2.0kb upstream 2.0kb upstream 2000 false Bd4: 44184500-44186499 Brachypodium distachyon
Bradi4g39600 2.0kb downstream 2.0kb downstream 5800 true Bd4: 44178700-44184499 Brachypodium distachyon
Bradi4g39600 2.0kb downstream 2.0kb downstream 2000 false Bd4: 44178700-44180699 Brachypodium distachyon
Bradi4g39600 5.0kb upstream 5.0kb upstream 8800 true Bd4: 44180700-44189499 Brachypodium distachyon
Bradi4g39600 5.0kb upstream 5.0kb upstream 5000 false Bd4: 44184500-44189499 Brachypodium distachyon
Bradi4g39600 5.0kb downstream 5.0kb downstream 8800 true Bd4: 44175700-44184499 Brachypodium distachyon
Bradi4g39600 5.0kb downstream 5.0kb downstream 5000 false Bd4: 44175700-44180699 Brachypodium distachyon
Bradi4g39600 10.0kb upstream 10.0kb upstream 13800 true Bd4: 44180700-44194499 Brachypodium distachyon
Bradi4g39600 10.0kb upstream 10.0kb upstream 10000 false Bd4: 44184500-44194499 Brachypodium distachyon
Bradi4g39600 10.0kb downstream 10.0kb downstream 13800 true Bd4: 44170700-44184499 Brachypodium distachyon
Bradi4g39600 10.0kb downstream 10.0kb downstream 10000 false Bd4: 44170700-44180699 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041419 5273 Angiosperm View MSA
124587378 5269 Grass View MSA
121350908 5274 Embryophyte View MSA
123427854 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.289     High  
cufflinks 24.834     High  
cufflinks 23.256     High  
cufflinks 29.126     High  
cufflinks 26.93     High  
cufflinks 22.72     High  
cufflinks 23.375     High  
cufflinks 22.652     High  
cufflinks 22.123     High  
cufflinks 24.525     High  
cufflinks 6.128       Low
cufflinks 21.681     High  
cufflinks 5.066       Low
cufflinks 5.722       Low
cufflinks 21.752     High  
cufflinks 24.646     High  
cufflinks 29.788     High  
cufflinks 50.525     High High
cufflinks 25.065     High  
cufflinks 6.588       Low
cufflinks 38.935     High High
cufflinks 21.63     High  
cufflinks 21.365     High  
cufflinks 24.144     High  
cufflinks 26.072     High  
cufflinks 25.574     High  
cufflinks 5.576       Low
cufflinks 22.323     High  
cufflinks 20.847     High  
cufflinks 36.328     High High

0 Strain